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Tan0015330 (gene) of Snake gourd v1 genome

Gene IDTan0015330
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG06:17230902..17231249
RNA-Seq ExpressionTan0015330
SyntenyTan0015330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-1148.89Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI
        MASKK ASN++ AS+ YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K+NPL+D S  A ++ ++ ++PDVMSVMMADI
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.6e-1349.46Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPD
        MASKKAASN++ ASN YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K+NPL+D S  + ++ ++ ++PDVMSVMMADI P+
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPD

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.2e-1148.89Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI
        MASKKAAS ++AAS+TYT P TRSRSKG+    D+   A+  +I+K+L E+ K  +++K+NPL++    A ++  + ++PDVMSVMMAD+
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.2e-1148.89Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI
        MASKKAAS ++AAS+TYT P TRSRSKG+    D+   A+  +I+K+L E+ K  +++K+NPL++    A ++  + ++PDVMSVMMAD+
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]5.2e-1148.89Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI
        MASKKAAS ++AAS+TYT P TRSRSKG+    D+   A+  +I+K+L E+ K  +++K+NPL++    A ++  + ++PDVMSVMMAD+
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI

TrEMBL top hitse value%identityAlignment
A0A1S3C4J2 uncharacterized protein LOC1034963894.3e-1146.94Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPDERNGR
        MASKK ASN+  AS+ YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K NPL+D S  A +  ++ ++PDVMSVMMADI   E++ R
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPDERNGR

A0A5A7TFN2 Ty3-gypsy retrotransposon protein2.5e-1148.89Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI
        MASKKAASN++ AS+ YT P TRSRSKG+    D+  + +   I+K+L E+ K  +++K+N L+D S  A N+ ++ ++PDV SVMMADI
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI

A0A5A7VCU1 Ty3-gypsy retrotransposon protein3.3e-1147.78Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI
        MASKKAAS ++ AS+ YT P TR+RSKG+    D+  D +P +I+K+L E+ K  +++K+N L+D S  A ++ ++  +PDVMSVMM DI
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.7e-1349.46Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPD
        MASKKAASN++ ASN YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K+NPL+D S  + ++ ++ ++PDVMSVMMADI P+
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPD

A0A5D3DC86 Ty3-gypsy retrotransposon protein8.7e-1248.89Show/hide
Query:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI
        MASKK ASN++ AS+ YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K+NPL+D S  A ++ ++ ++PDVMSVMMADI
Subjt:  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAAGAAAGCTGCATCAAACACTGCTGCTGCAAGCAACACCTACACGAGTCCGACAACTCGCAGTCGTTCCAAAGGGGTTGAGACAAGTAATGATCGAACTCC
TGATGCAATGCCAAACAACATCATCAAACGGCTAGATGAGGCTTCCAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCCTGCTCTTAATCAAC
AGAGGGAGACATCAAATCCTGATGTAATGTCAGTCATGATGGCTGATATAGACCCTGATGAAAGAAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGGTGGT
AGAAGAGAGAGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAAGAAAGCTGCATCAAACACTGCTGCTGCAAGCAACACCTACACGAGTCCGACAACTCGCAGTCGTTCCAAAGGGGTTGAGACAAGTAATGATCGAACTCC
TGATGCAATGCCAAACAACATCATCAAACGGCTAGATGAGGCTTCCAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCCTGCTCTTAATCAAC
AGAGGGAGACATCAAATCCTGATGTAATGTCAGTCATGATGGCTGATATAGACCCTGATGAAAGAAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGGTGGT
AGAAGAGAGAGATCTTGA
Protein sequenceShow/hide protein sequence
MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPDERNGRDGKKDQSPNEGG
RRERS