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Tan0015381 (gene) of Snake gourd v1 genome

Gene IDTan0015381
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG08:30807861..30819578
RNA-Seq ExpressionTan0015381
SyntenyTan0015381
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]4.4e-0462.86Show/hide
Query:  GESGRFADSICLPYWGQDRVSDWELNLERWNSLLP
        GESG+  DSICL + GQDR+  WE N  RWN LLP
Subjt:  GESGRFADSICLPYWGQDRVSDWELNLERWNSLLP

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]2.0e-0467.65Show/hide
Query:  ESGRFADSICLPYWGQDRVSDWELNLERWNSLLP
        ESG+ ADS+ L +WGQDRV  WE N  RWNSLLP
Subjt:  ESGRFADSICLPYWGQDRVSDWELNLERWNSLLP

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-0565.71Show/hide
Query:  GESGRFADSICLPYWGQDRVSDWELNLERWNSLLP
        GESG+  DSICL +WGQDRV  WE N  RWNS +P
Subjt:  GESGRFADSICLPYWGQDRVSDWELNLERWNSLLP

XP_038900633.1 uncharacterized protein LOC120087799 [Benincasa hispida]1.1e-1355.06Show/hide
Query:  PQTNCSLEEHWYLRHMIGPHPQCDMNQGPPIVMPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDIGVFPYMLCKVELQDGDTLNAF
        P+TN S EE            + D N+G  I+M +G I RSRAKKL QALITHIQAMV+S ++++ED+ V  YMLCKVE QD D LNAF
Subjt:  PQTNCSLEEHWYLRHMIGPHPQCDMNQGPPIVMPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDIGVFPYMLCKVELQDGDTLNAF

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein2.1e-0462.86Show/hide
Query:  GESGRFADSICLPYWGQDRVSDWELNLERWNSLLP
        GESG+  DSICL + GQDR+  WE N  RWN LLP
Subjt:  GESGRFADSICLPYWGQDRVSDWELNLERWNSLLP

A0A5A7U2P4 Integrase catalytic domain-containing protein9.6e-0567.65Show/hide
Query:  ESGRFADSICLPYWGQDRVSDWELNLERWNSLLP
        ESG+ ADS+ L +WGQDRV  WE N  RWNSLLP
Subjt:  ESGRFADSICLPYWGQDRVSDWELNLERWNSLLP

A0A5D3C3J6 Gag/pol protein1.5e-0565.71Show/hide
Query:  GESGRFADSICLPYWGQDRVSDWELNLERWNSLLP
        GESG+  DSICL +WGQDRV  WE N  RWNS +P
Subjt:  GESGRFADSICLPYWGQDRVSDWELNLERWNSLLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCGATTCGCCGACTCAATATGCCTACCTTATTGGGGACAAGACCGAGTGAGCGACTGGGAACTTAACTTAGAAAGATGGAATTCACTCCTTCCCGG
CCTGACCCTCTCATTGGCTCGAGAAGGACTATGTTTGTTGGTAGGACCACAAACTAATTGTTCATTAGAGGAGCACTGGTACTTAAGGCACATGATCGGGCCGCATCCAC
AGTGTGATATGAACCAAGGACCACCTATTGTCATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGGTG
AGCTCAAAAGAGGAGGTTCTAGAAGATATTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAACTTCAAGATGGAGACACATTAAATGCATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCGATTCGCCGACTCAATATGCCTACCTTATTGGGGACAAGACCGAGTGAGCGACTGGGAACTTAACTTAGAAAGATGGAATTCACTCCTTCCCGG
CCTGACCCTCTCATTGGCTCGAGAAGGACTATGTTTGTTGGTAGGACCACAAACTAATTGTTCATTAGAGGAGCACTGGTACTTAAGGCACATGATCGGGCCGCATCCAC
AGTGTGATATGAACCAAGGACCACCTATTGTCATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGGTG
AGCTCAAAAGAGGAGGTTCTAGAAGATATTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAACTTCAAGATGGAGACACATTAAATGCATTCTAA
Protein sequenceShow/hide protein sequence
MGESGRFADSICLPYWGQDRVSDWELNLERWNSLLPGLTLSLAREGLCLLVGPQTNCSLEEHWYLRHMIGPHPQCDMNQGPPIVMPEGPITRSRAKKLQQALITHIQAMV
SSKEEVLEDIGVFPYMLCKVELQDGDTLNAF