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Tan0015393 (gene) of Snake gourd v1 genome

Gene IDTan0015393
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:10466025..10470825
RNA-Seq ExpressionTan0015393
SyntenyTan0015393
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]8.3e-0965.38Show/hide
Query:  KILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +IL   L   V+TG + L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  KILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-0758.06Show/hide
Query:  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        PR NR S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.7e-0655.56Show/hide
Query:  RPRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        + R NR S++   L +       T +  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  RPRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-0758.06Show/hide
Query:  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        PR NR S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]2.3e-0666.04Show/hide
Query:  KILPEALWYRVHTGLIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +IL  +L+  V T +I  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  KILPEALWYRVHTGLIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein4.0e-0965.38Show/hide
Query:  KILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +IL   L   V+TG + L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  KILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7T7M6 Reverse transcriptase9.9e-0858.06Show/hide
Query:  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        PR NR S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein8.4e-0755.56Show/hide
Query:  RPRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        + R NR S++   L +       T +  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  RPRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5D3BTP3 Reverse transcriptase9.9e-0858.06Show/hide
Query:  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        PR NR S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5D3DUS7 Uncharacterized protein1.1e-0666.04Show/hide
Query:  KILPEALWYRVHTGLIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +IL  +L+  V T +I  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  KILPEALWYRVHTGLIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAGAGCAAGTTAGCTCTAGAAGAAACTGAAAAAGATTGCCATATAAAGGAAGTTGTTTTCAAGAAACCAGGATTAGCTGAAGAGAGCTCAATGCTTGGTTGTTT
AGCAGCAAGGAGATCAACTCAGACAAGCTCTGATTTTCTGTTCATCTCGAGCTCCACAAGAAGAGGTAAGAACAGAATTTGCTGTCAAATCCGAGAGGTCTCTGATGTTT
TGGTTGTTTTAATCTGTATACTTGGAGTTAGAAGCTCTATTAGGCCAAGAGCAAATAGGTCGAGTGTACGGGCTAAGATTCTACCCGAGGCTTTATGGTACCGTGTGCAC
ACAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGTGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCC
CACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACAGAGCAAGTTAGCTCTAGAAGAAACTGAAAAAGATTGCCATATAAAGGAAGTTGTTTTCAAGAAACCAGGATTAGCTGAAGAGAGCTCAATGCTTGGTTGTTT
AGCAGCAAGGAGATCAACTCAGACAAGCTCTGATTTTCTGTTCATCTCGAGCTCCACAAGAAGAGGTAAGAACAGAATTTGCTGTCAAATCCGAGAGGTCTCTGATGTTT
TGGTTGTTTTAATCTGTATACTTGGAGTTAGAAGCTCTATTAGGCCAAGAGCAAATAGGTCGAGTGTACGGGCTAAGATTCTACCCGAGGCTTTATGGTACCGTGTGCAC
ACAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGTGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCC
CACTACATCGTAG
Protein sequenceShow/hide protein sequence
MRQSKLALEETEKDCHIKEVVFKKPGLAEESSMLGCLAARRSTQTSSDFLFISSSTRRGKNRICCQIREVSDVLVVLICILGVRSSIRPRANRSSVRAKILPEALWYRVH
TGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS