; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0015395 (gene) of Snake gourd v1 genome

Gene IDTan0015395
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L16, chloroplastic
Genome locationContig00124:273273..274286
RNA-Seq ExpressionTan0015395
SyntenyTan0015395
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR016180 - Ribosomal protein L10e/L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJA16182.1 ribosomal protein L16 [Siraitia grosvenorii]2.3e-6999.25Show/hide
Query:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        NPKRTRFRKHHRGRMKG+SYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
Subjt:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG
        LYEMGGVAENIARKAISIAASKMPIRTQFITSG
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG

QJR52995.1 50S ribosomal protein L16 [Herpetospermum pedunculosum]4.2e-7197.81Show/hide
Query:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV
        +TINYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV
Subjt:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV

Query:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITS
        KPGRILYEMGGVAENIARKAISIAASK+PIRTQFITS
Subjt:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITS

YP_009176040.1 ribosomal protein L16 [Ficus racemosa]1.4e-6994.93Show/hide
Query:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV
        +TINYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVV
Subjt:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV

Query:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
        KPGRILYEM GV ENIARKAISIAASKMPIRTQFI SG
Subjt:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG

YP_009560330.1 50S ribosomal protein L16 [Zelkova schneideriana]8.0e-7094.93Show/hide
Query:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV
        ++INYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVV
Subjt:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV

Query:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
        KPGRILYEM GVAENIARKAISIAASKMPIRTQFI SG
Subjt:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG

YP_009560873.1 ribosomal protein L16 [Trichosanthes kirilowii]1.9e-7199.26Show/hide
Query:  INYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP
        +NYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP
Subjt:  INYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP

Query:  GRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
        GRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
Subjt:  GRILYEMGGVAENIARKAISIAASKMPIRTQFITSG

TrEMBL top hitse value%identityAlignment
A0A0N7H9Y2 50S ribosomal protein L16, chloroplastic6.6e-7094.93Show/hide
Query:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV
        +TINYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVV
Subjt:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV

Query:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
        KPGRILYEM GV ENIARKAISIAASKMPIRTQFI SG
Subjt:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG

A0A3R5W202 50S ribosomal protein L16, chloroplastic3.9e-7094.93Show/hide
Query:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV
        ++INYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVV
Subjt:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV

Query:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
        KPGRILYEM GVAENIARKAISIAASKMPIRTQFI SG
Subjt:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG

A0A410HFB9 50S ribosomal protein L16, chloroplastic9.2e-7299.26Show/hide
Query:  INYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP
        +NYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP
Subjt:  INYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP

Query:  GRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
        GRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
Subjt:  GRILYEMGGVAENIARKAISIAASKMPIRTQFITSG

A0A6H1XKZ2 50S ribosomal protein L16, chloroplastic1.1e-6999.25Show/hide
Query:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        NPKRTRFRKHHRGRMKG+SYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
Subjt:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG
        LYEMGGVAENIARKAISIAASKMPIRTQFITSG
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG

A0A6M4K441 50S ribosomal protein L16, chloroplastic2.1e-7197.81Show/hide
Query:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV
        +TINYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV
Subjt:  ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVV

Query:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITS
        KPGRILYEMGGVAENIARKAISIAASK+PIRTQFITS
Subjt:  KPGRILYEMGGVAENIARKAISIAASKMPIRTQFITS

SwissProt top hitse value%identityAlignment
B1NWI7 50S ribosomal protein L16, chloroplastic5.4e-6994.74Show/hide
Query:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        +PKRTRFRK HRGRMKG+++RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
Subjt:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG
        LYEMGGVAENIARKAISIAASKMPIRTQFI SG
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG

Q09ME0 50S ribosomal protein L16, chloroplastic1.2e-6894.74Show/hide
Query:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        NPKRTRFRK HRGRMKG+SYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
Subjt:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG
        LYEM GVAENIARKAISIAASKMPIRTQFI SG
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG

Q0ZIY1 50S ribosomal protein L16, chloroplastic5.4e-6994.74Show/hide
Query:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        +PKRTRFRK HRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRI
Subjt:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG
        LYEMGGVAENIARKAISIAASKMPIRTQFI SG
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG

Q49KW1 50S ribosomal protein L16, chloroplastic1.2e-6893.98Show/hide
Query:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        +PKRTRFRK HRGRMKG+SYRGNRICFG+YA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRI
Subjt:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG
        LYEMGGVAENIARKAISIAASKMPIRTQFI SG
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG

Q4VZN1 50S ribosomal protein L16, chloroplastic2.9e-7096.99Show/hide
Query:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        +PKRTRFRKHHRGRMKG+SYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
Subjt:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG
        LYEM GVAENIARKAISIAASKMPIRTQFITSG
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITSG

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 127.8e-4770.45Show/hide
Query:  PKRTRFRKHHRGRM-KGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        P+RT+F+KHHRGR+ KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I
Subjt:  PKRTRFRKHHRGRM-KGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITS
        +YEMGGV+E +AR+AISIAASK+P +T+FI S
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITS

ATCG00790.1 ribosomal protein L169.8e-6689.39Show/hide
Query:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        +PKRTRFRK HRGR+KG+S RGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+I
Subjt:  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Query:  LYEMGGVAENIARKAISIAASKMPIRTQFITS
        LYEMGGV ENIARKAISIAASKMPI+TQFI S
Subjt:  LYEMGGVAENIARKAISIAASKMPIRTQFITS

ATMG00080.1 ribosomal protein L168.4e-2543.48Show/hide
Query:  PKRTRFRKHHRGR-MKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWV
        PKRT++ K+ +GR  +G    G ++ FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+
Subjt:  PKRTRFRKHHRGR-MKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWV

Query:  AVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFI
        A V  G+I +EM GV+   AR+A ++AA K    T+F+
Subjt:  AVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCGGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTTCGTAAACACCATAGAGGAAGAATGAAAGGGATGTCTTATCGAGGCAATCGTATTTGCTTCGG
TAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTAC
GTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTT
TATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCGGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTTCGTAAACACCATAGAGGAAGAATGAAAGGGATGTCTTATCGAGGCAATCGTATTTGCTTCGG
TAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTAC
GTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTT
TATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAA
Protein sequenceShow/hide protein sequence
MLSEITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRIL
YEMGGVAENIARKAISIAASKMPIRTQFITSG