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Tan0015434 (gene) of Snake gourd v1 genome

Gene IDTan0015434
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG03:227251..227655
RNA-Seq ExpressionTan0015434
SyntenyTan0015434
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026128.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-4986.92Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGN KQHIAHFVETCEN G+RGD LV+QFVR+LKGNAF+WR VSMME+TN KQRKGEPV+DYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL

Query:  DCKDRLT
        DCKD+LT
Subjt:  DCKDRLT

KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.0e-5085.98Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL
        MYSKPYTKRI+NLRMP GYQP KFQ+FDGKGNPKQHIAHFVETCENAG+RGD LV+QFVR+LKGNAF+WR VSMME+TN KQRKGEPV+DYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL

Query:  DCKDRLT
        DCK++LT
Subjt:  DCKDRLT

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-5086.92Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL
        MYSKPYTKRIDNLR+P GYQPPKFQQFDGKGNPK+HIAHFVETCENAG+RGD LV+QFVR LKGNAF+W  VSMME+TN KQRKGEPV+DYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL

Query:  DCKDRLT
        DCKD+LT
Subjt:  DCKDRLT

TYK15513.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-5086.92Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL
        MYSKPYTKRIDNLR+P GYQPPKFQQFDGKGNPK+HIAHFVETCENAG+RGD LV+QFVR LKGNAF+W  VSMME+TN KQRKGEPV+DYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL

Query:  DCKDRLT
        DCKD+LT
Subjt:  DCKDRLT

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.3e-4872.39Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS
        MYSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+W                           RTVS
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS

Query:  MMEITNAKQRKGEPVVDYINRWRALSLDCKDRLT
        MME+TN KQRKGEPV+DYINRWRALSLDCKDRLT
Subjt:  MMEITNAKQRKGEPVVDYINRWRALSLDCKDRLT

TrEMBL top hitse value%identityAlignment
A0A5A7TJH2 Retrotransposon gag protein4.4e-5085.98Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL
        MYSKPYTKRI+NLRMP GYQP KFQ+FDGKGNPKQHIAHFVETCENAG+RGD LV+QFVR+LKGNAF+WR VSMME+TN KQRKGEPV+DYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL

Query:  DCKDRLT
        DCK++LT
Subjt:  DCKDRLT

A0A5A7VDY3 Ty3-gypsy retrotransposon protein8.8e-5186.92Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL
        MYSKPYTKRIDNLR+P GYQPPKFQQFDGKGNPK+HIAHFVETCENAG+RGD LV+QFVR LKGNAF+W  VSMME+TN KQRKGEPV+DYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL

Query:  DCKDRLT
        DCKD+LT
Subjt:  DCKDRLT

A0A5D3CK73 Ty3-gypsy retrotransposon protein9.8e-5086.92Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGN KQHIAHFVETCEN G+RGD LV+QFVR+LKGNAF+WR VSMME+TN KQRKGEPV+DYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL

Query:  DCKDRLT
        DCKD+LT
Subjt:  DCKDRLT

A0A5D3CUF5 Ty3-gypsy retrotransposon protein8.8e-5186.92Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL
        MYSKPYTKRIDNLR+P GYQPPKFQQFDGKGNPK+HIAHFVETCENAG+RGD LV+QFVR LKGNAF+W  VSMME+TN KQRKGEPV+DYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSL

Query:  DCKDRLT
        DCKD+LT
Subjt:  DCKDRLT

A0A6J1DYQ8 uncharacterized protein LOC1110258344.1e-4872.39Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS
        +YSKPYTKRI++LRMP GYQPPKFQ FDGKGNPKQHIAHFVETCENAGTRGD LVKQFVRTLKGNAFDW                           RTVS
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS

Query:  MMEITNAKQRKGEPVVDYINRWRALSLDCKDRLT
        MME+TN++QRKGEPVV+YINRWRALSLDCKDRLT
Subjt:  MMEITNAKQRKGEPVVDYINRWRALSLDCKDRLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCCAAACCGTACACTAAAAGGATTGACAACTTGAGAATGCCTACAGGGTACCAACCTCCAAAATTTCAACAGTTTGACGGGAAGGGTAACCCAAAGCAACACAT
TGCACATTTCGTTGAAACCTGTGAAAACGCAGGGACACGCGGTGACCTCTTGGTGAAACAATTTGTGCGTACCTTGAAGGGAAACGCTTTTGACTGGCGAACTGTCAGTA
TGATGGAGATCACAAATGCAAAACAGCGGAAGGGAGAGCCTGTTGTTGATTATATTAATCGTTGGAGAGCTCTAAGTTTAGACTGTAAGGACCGTCTCACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACTCCAAACCGTACACTAAAAGGATTGACAACTTGAGAATGCCTACAGGGTACCAACCTCCAAAATTTCAACAGTTTGACGGGAAGGGTAACCCAAAGCAACACAT
TGCACATTTCGTTGAAACCTGTGAAAACGCAGGGACACGCGGTGACCTCTTGGTGAAACAATTTGTGCGTACCTTGAAGGGAAACGCTTTTGACTGGCGAACTGTCAGTA
TGATGGAGATCACAAATGCAAAACAGCGGAAGGGAGAGCCTGTTGTTGATTATATTAATCGTTGGAGAGCTCTAAGTTTAGACTGTAAGGACCGTCTCACCTAG
Protein sequenceShow/hide protein sequence
MYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWRTVSMMEITNAKQRKGEPVVDYINRWRALSLDCKDRLT