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Tan0015435 (gene) of Snake gourd v1 genome

Gene IDTan0015435
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
Genome locationLG10:15310561..15311112
RNA-Seq ExpressionTan0015435
SyntenyTan0015435
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013591 - Brevis radix (BRX) domain
IPR027988 - Transcription factor BREVIS RADIX, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578904.1 PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]4.5e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

KAG7016426.1 putative E3 ubiquitin-protein ligase HERC1 [Cucurbita argyrosperma subsp. argyrosperma]4.5e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

XP_004148808.2 LOW QUALITY PROTEIN: PH, RCC1 and FYVE domains-containing protein 1 [Cucumis sativus]4.5e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

XP_022141432.1 uncharacterized protein LOC111011834 [Momordica charantia]4.5e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

XP_023551654.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo]4.5e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

TrEMBL top hitse value%identityAlignment
A0A0A0KI75 Uncharacterized protein2.2e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

A0A5A7USQ7 E3 ubiquitin-protein ligase HERC2-like isoform X12.2e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

A0A5D3DJP6 E3 ubiquitin-protein ligase HERC2-like isoform X12.2e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

A0A6J1CJU4 uncharacterized protein LOC1110118342.2e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

A0A6J1K3G5 PH, RCC1 and FYVE domains-containing protein 1-like2.2e-0894.59Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M LAAEESGKSKAAKEVIKLLTAQLKDM ERLPPGVY
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY

SwissProt top hitse value%identityAlignment
Q947D2 PH, RCC1 and FYVE domains-containing protein 14.4e-0657.78Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVYISLVALRD
        + LA EES KS+AAKE IK L AQLKD+ E+LPPG  + L  L++
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVYISLVALRD

Arabidopsis top hitse value%identityAlignment
AT1G76950.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain3.1e-0757.78Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVYISLVALRD
        + LA EES KS+AAKE IK L AQLKD+ E+LPPG  + L  L++
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVYISLVALRD

AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain3.8e-0565.71Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPG
        + +  EE+ + KAAKEVIK LTAQLKDM ERLP G
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPG

AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain1.5e-0671.43Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPG
        + +A+EES + KAAKEVIK LTAQLKDM ERLP G
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPG

AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain1.5e-0671.43Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPG
        + +A+EES + KAAKEVIK LTAQLKDM ERLP G
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPG

AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain1.4e-0772.97Show/hide
Query:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY
        M+LAAEES KS+AAKEVIK LTAQ+KD+   LPPG Y
Subjt:  MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATTGGCTGCAGAGGAATCTGGTAAATCTAAAGCGGCGAAAGAAGTTATCAAGTTACTAACTGCTCAGCTTAAAGATATGGTTGAGAGGTTACCACCTGGTGTATA
TATCAGTCTTGTGGCTCTGAGGGACGATACTCAGGATCTAAAACGTGTGCGCTTCAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACATTGGCTGCAGAGGAATCTGGTAAATCTAAAGCGGCGAAAGAAGTTATCAAGTTACTAACTGCTCAGCTTAAAGATATGGTTGAGAGGTTACCACCTGGTGTATA
TATCAGTCTTGTGGCTCTGAGGGACGATACTCAGGATCTAAAACGTGTGCGCTTCAGGTGA
Protein sequenceShow/hide protein sequence
MTLAAEESGKSKAAKEVIKLLTAQLKDMVERLPPGVYISLVALRDDTQDLKRVRFR