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Tan0015440 (gene) of Snake gourd v1 genome

Gene IDTan0015440
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDEAD-box ATP-dependent RNA helicase 17
Genome locationLG08:64739..66113
RNA-Seq ExpressionTan0015440
SyntenyTan0015440
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR011545 - DEAD/DEAH box helicase domain
IPR014014 - RNA helicase, DEAD-box type, Q motif
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154763.1 DEAD-box ATP-dependent RNA helicase 17 [Momordica charantia]1.6e-4488.68Show/hide
Query:  MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQ
        MNSS KFMNEE K T+KKM +ESEIFASCTFSSLGLHSTLCDQL++KMGFEVPTLVQAQAI AILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQ
Subjt:  MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQ

Query:  RADGTF
        RADGTF
Subjt:  RADGTF

XP_022946513.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata]3.3e-4290.91Show/hide
Query:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

XP_022946514.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata]3.3e-4290.91Show/hide
Query:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

XP_022975310.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima]3.3e-4290.91Show/hide
Query:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

XP_022975312.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima]3.3e-4290.91Show/hide
Query:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

TrEMBL top hitse value%identityAlignment
A0A0A0LKK2 Q_MOTIF domain-containing protein1.2e-4285.98Show/hide
Query:  MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQ
        M+SSIK+ NE  K T KKM KE E+FASCTF+SLGL STLCDQLRDKMGFEVPTLVQAQAIPAILS RHVLVNAATGTGKTVAYLVPIIHHLQKS RR Q
Subjt:  MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQ

Query:  RADGTFG
        RADGTFG
Subjt:  RADGTFG

A0A6J1DL75 DEAD-box ATP-dependent RNA helicase 177.7e-4588.68Show/hide
Query:  MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQ
        MNSS KFMNEE K T+KKM +ESEIFASCTFSSLGLHSTLCDQL++KMGFEVPTLVQAQAI AILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQ
Subjt:  MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQ

Query:  RADGTF
        RADGTF
Subjt:  RADGTF

A0A6J1G427 DEAD-box ATP-dependent RNA helicase 17 isoform X11.6e-4290.91Show/hide
Query:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1ICQ6 DEAD-box ATP-dependent RNA helicase 17 isoform X21.6e-4290.91Show/hide
Query:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1IGD1 DEAD-box ATP-dependent RNA helicase 17 isoform X11.6e-4290.91Show/hide
Query:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

SwissProt top hitse value%identityAlignment
Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase prp53.1e-1144.44Show/hide
Query:  FSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFGFSET
        +S  GL     D + D++G+E PT +Q+QAIPAI+SGR V+  A TG+GKTVA+L+P+  H+ K  R ++  +G  G   T
Subjt:  FSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFGFSET

Q0DLB9 DEAD-box ATP-dependent RNA helicase 171.6e-2664.63Show/hide
Query:  IFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        +FASC+F+ LGLH TLC  L+DKMGF+ PT +QAQAIP  +SG+H+LV AATGTGKT+AYL PI+H LQ  + R++R DGTF
Subjt:  IFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

Q7XJN0 DEAD-box ATP-dependent RNA helicase 178.3e-2864.95Show/hide
Query:  ETKATRKKMFK-ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        ETK   K   K +S +FASC+FSSLGL + L DQL+++MGFE PTLVQAQAIP ILSGR VLVNA TGTGKT+AYL P+IHHLQ    ++ R+ GTF
Subjt:  ETKATRKKMFK-ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

Q86B47 Probable ATP-dependent RNA helicase CG86113.7e-1244.83Show/hide
Query:  KMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADG
        K  KE+ IF     S+LGLH      L D +     T VQ + IP +L G+ VLV + TG+GKT+AY +P++  LQK   RIQR DG
Subjt:  KMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADG

Q9H8H2 Probable ATP-dependent RNA helicase DDX313.4e-1340Show/hide
Query:  ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        + ++F S  F  LGLH  L   +   +     T VQ Q+IP +L GR  LV + TG+GKT+AY +P++  LQ  + +IQR+DG +
Subjt:  ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

Arabidopsis top hitse value%identityAlignment
AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein8.5e-1240.7Show/hide
Query:  NEETKATRKKMFKE--SEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL
        N++ K  ++K   E  S +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI+ G   ++ + TG+GKT+AYL+PI+  +
Subjt:  NEETKATRKKMFKE--SEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL

AT1G59990.1 DEA(D/H)-box RNA helicase family protein1.0e-0944.68Show/hide
Query:  SSIKFMNEETKATRKKMFKESE--IFASCTFS--SLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL
        S  K++     AT  ++ K+     FA  T S  SLGL   +   LRD  GF+ P+L QA  IP+ILSG+ V+V A TG+GKT  YL PII  L
Subjt:  SSIKFMNEETKATRKKMFKESE--IFASCTFS--SLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL

AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein5.9e-2964.95Show/hide
Query:  ETKATRKKMFK-ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        ETK   K   K +S +FASC+FSSLGL + L DQL+++MGFE PTLVQAQAIP ILSGR VLVNA TGTGKT+AYL P+IHHLQ    ++ R+ GTF
Subjt:  ETKATRKKMFK-ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein3.6e-1039.74Show/hide
Query:  TFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFG
        TF   G  S +   ++ K  +E PT +Q QA+P +LSGR V+  A TG+GKT A+++P+I H+      +QR +G  G
Subjt:  TFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFG

AT4G34910.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.9e-1143.68Show/hide
Query:  EETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSD
        EE +  R++  ++ E  A  +F  LGL S L   L  K G E PTL+Q  AIP IL G+ V+  A TG+GKT+AYL+P++  L  +D
Subjt:  EETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCAGTATCAAATTTATGAACGAAGAGACGAAGGCGACGAGGAAGAAAATGTTTAAAGAGAGTGAAATTTTTGCTTCTTGTACGTTCTCCAGCCTCGGTCTGCA
CTCTACTTTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCCTATCCGGGCGTCACGTTCTTGTTAATG
CGGCCACGGGCACGGGCAAAACTGTTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCTGATGGAACTTTTGGTTTCTCAGAG
ACGACTTCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ACGGTCTGTTAGGGGCTTAAGGGTAAAGATGGATTTTTATCCACTTTCTAAAATTTTGTCTTTCCCACAGGGTCTCGGAACACGAAGGAACCACCGTCAGAAACGCGAAG
GCCAAGGTTAGACGCAGTTTACAAGCAGCCGCCTGCAGGACGGGCAGAACTCCTGCGATGAATAGCAGTATCAAATTTATGAACGAAGAGACGAAGGCGACGAGGAAGAA
AATGTTTAAAGAGAGTGAAATTTTTGCTTCTTGTACGTTCTCCAGCCTCGGTCTGCACTCTACTTTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCAACCC
TTGTACAGGCTCAAGCAATTCCGGCTATCCTATCCGGGCGTCACGTTCTTGTTAATGCGGCCACGGGCACGGGCAAAACTGTTGCGTATTTGGTTCCAATCATCCATCAC
TTGCAGAAGTCCGATCGTAGGATTCAGCGGGCTGATGGAACTTTTGGTTTCTCAGAGACGACTTCTAATTAGCCCACAAAATTCTGGATTTCATGTGCAACCACCAACTG
AAGAGAATTTGATGCAACCAAGTACACATATCAATAGGACAGGGGCATGCCCAAACGAAACAGAAGAATCTGACAGAGTAAGTTCCATCCCTCTACAATCCAATGGAAGA
TTGTGTCTAATACATATGCGAGGGAAGTCAATAAAGAAAGGAAAGAACTTAGATTTGTAAGCCATTGTCCAAAGGATGATCTTAGTCCTTTTAAGACCATCCTTTAAGAT
TATTAAAGAAT
Protein sequenceShow/hide protein sequence
MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFGFSE
TTSN