; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0015516 (gene) of Snake gourd v1 genome

Gene IDTan0015516
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionsplicing factor 1-like isoform X1
Genome locationLG07:10208021..10210819
RNA-Seq ExpressionTan0015516
SyntenyTan0015516
Gene Ontology termsGO:0048024 - regulation of mRNA splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR032570 - Splicing factor 1, helix-hairpin domain
IPR045071 - KH domain-containing BBP-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153802.1 branchpoint-bridging protein isoform X1 [Momordica charantia]9.1e-8891.67Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGN K+SGATISS APMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKK GGNES NGEN+KQ+QRKTKWGPDLTQDTAVRKGRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
        AYQTRLEQI ELLKSGTLEVPETQDSAL AENV+DKSPG QA++KNIQVQN ELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDR  LPV
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

XP_022153805.1 branchpoint-bridging protein isoform X4 [Momordica charantia]9.1e-8891.67Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGN K+SGATISS APMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKK GGNES NGEN+KQ+QRKTKWGPDLTQDTAVRKGRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
        AYQTRLEQI ELLKSGTLEVPETQDSAL AENV+DKSPG QA++KNIQVQN ELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDR  LPV
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

XP_022958561.1 branchpoint-bridging protein-like isoform X1 [Cucurbita moschata]5.5e-8582.41Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGNAK+SGAT SSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVP+FRVNKKLGGNESANGENEKQSQRKTKWGPDLTQD+AVR+GRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNK------------------------NIQVQNNELLELEKREVIGEILKLNPSYKAP
        AYQTRLEQIMELLKSGTLEVPETQDSA+EAENVDD SPG QA N+                        NIQV+NNELLE+EKREVIGEILKLNPSYKAP
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNK------------------------NIQVQNNELLELEKREVIGEILKLNPSYKAP

Query:  PDYRPLLKEDRLLLPV
        PDYRPLLK D+LLLPV
Subjt:  PDYRPLLKEDRLLLPV

XP_022958562.1 branchpoint-bridging protein-like isoform X2 [Cucurbita moschata]6.5e-8691.15Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGNAK+SGAT SSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVP+FRVNKKLGGNESANGENEKQSQRKTKWGPDLTQD+AVR+GRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
        AYQTRLEQIMELLKSGTLEVPETQDSA+EAENVDD SPG QA N   +V+NNELLE+EKREVIGEILKLNPSYKAPPDYRPLLK D+LLLPV
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

XP_023534206.1 branchpoint-bridging protein-like isoform X2 [Cucurbita pepo subsp. pepo]6.5e-8691.15Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGNAK+SGAT SSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVP+FRVNKKLGGNESANGENEKQSQRKTKWGPDLTQD+AVR+GRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
        AYQTRLEQIMELLKSGTLEVPETQDSA+EAENVDD SPG QA N   +V+NNELLE+EKREVIGEILKLNPSYKAPPDYRPLLK D+LLLPV
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

TrEMBL top hitse value%identityAlignment
A0A6J1DHW1 branchpoint-bridging protein isoform X44.4e-8891.67Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGN K+SGATISS APMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKK GGNES NGEN+KQ+QRKTKWGPDLTQDTAVRKGRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
        AYQTRLEQI ELLKSGTLEVPETQDSAL AENV+DKSPG QA++KNIQVQN ELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDR  LPV
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

A0A6J1DII6 branchpoint-bridging protein isoform X27.8e-8590.1Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGN K+SGATISS APMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKK GGNES NGEN+KQ+QRKTKWGPDLTQDTAVRKGRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
        AYQTRLEQI ELLKSGTLEVPETQDSAL AENV+DKSPG QA++K   VQN ELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDR  LPV
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

A0A6J1DJY7 branchpoint-bridging protein isoform X14.4e-8891.67Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGN K+SGATISS APMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKK GGNES NGEN+KQ+QRKTKWGPDLTQDTAVRKGRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
        AYQTRLEQI ELLKSGTLEVPETQDSAL AENV+DKSPG QA++KNIQVQN ELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDR  LPV
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

A0A6J1H260 branchpoint-bridging protein-like isoform X23.2e-8691.15Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGNAK+SGAT SSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVP+FRVNKKLGGNESANGENEKQSQRKTKWGPDLTQD+AVR+GRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
        AYQTRLEQIMELLKSGTLEVPETQDSA+EAENVDD SPG QA N   +V+NNELLE+EKREVIGEILKLNPSYKAPPDYRPLLK D+LLLPV
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

A0A6J1H2E4 branchpoint-bridging protein-like isoform X12.7e-8582.41Show/hide
Query:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI
        MSAEVEKTSHIEPGNAK+SGAT SSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVP+FRVNKKLGGNESANGENEKQSQRKTKWGPDLTQD+AVR+GRLI
Subjt:  MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLI

Query:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNK------------------------NIQVQNNELLELEKREVIGEILKLNPSYKAP
        AYQTRLEQIMELLKSGTLEVPETQDSA+EAENVDD SPG QA N+                        NIQV+NNELLE+EKREVIGEILKLNPSYKAP
Subjt:  AYQTRLEQIMELLKSGTLEVPETQDSALEAENVDDKSPGPQANNK------------------------NIQVQNNELLELEKREVIGEILKLNPSYKAP

Query:  PDYRPLLKEDRLLLPV
        PDYRPLLK D+LLLPV
Subjt:  PDYRPLLKEDRLLLPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G32940.1 RNA-binding KH domain-containing protein2.1e-3454.94Show/hide
Query:  KVSMFAAKTGFVIPKNKLSGSLVPIF-RVNKKLGGNESANGENEK-QSQRKTKWGPDLTQDTAVRKGRLIAYQTRLEQIMELLKSGTLEVPETQDSALEA
        K+SMF AK+GFVIPKNKLSGSL+PIF R NK LG  +S  G   K   +RKTKW PDL+QD AV+K R +AYQ R++QI + L+SGTLEV ET       
Subjt:  KVSMFAAKTGFVIPKNKLSGSLVPIF-RVNKKLGGNESANGENEK-QSQRKTKWGPDLTQDTAVRKGRLIAYQTRLEQIMELLKSGTLEVPETQDSALEA

Query:  ENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
                            N   LE EKRE IGEIL+LNP YKAPPDY+PLLKE RL + V
Subjt:  ENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

AT5G51300.1 splicing factor-related1.0e-0429.05Show/hide
Query:  GGNESANGENEKQSQRKTKWG----------PDLTQDTA---VRKGRLIAYQTRLEQIMELLKSGTL--EVPETQDSALEAENVDDKSPGPQANNKNIQV
        GG +S  G      +RK++W           PD  +D          + A  +RL +I  +L+SG    + PE Q S          SP P  +N  I++
Subjt:  GGNESANGENEKQSQRKTKWG----------PDLTQDTA---VRKGRLIAYQTRLEQIMELLKSGTL--EVPETQDSALEAENVDDKSPGPQANNKNIQV

Query:  QNNEL-----LELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
           E      L  E++E+I +I+K NP++K P DYRP     +L +P+
Subjt:  QNNEL-----LELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

AT5G51300.2 splicing factor-related1.0e-0429.05Show/hide
Query:  GGNESANGENEKQSQRKTKWG----------PDLTQDTA---VRKGRLIAYQTRLEQIMELLKSGTL--EVPETQDSALEAENVDDKSPGPQANNKNIQV
        GG +S  G      +RK++W           PD  +D          + A  +RL +I  +L+SG    + PE Q S          SP P  +N  I++
Subjt:  GGNESANGENEKQSQRKTKWG----------PDLTQDTA---VRKGRLIAYQTRLEQIMELLKSGTL--EVPETQDSALEAENVDDKSPGPQANNKNIQV

Query:  QNNEL-----LELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
           E      L  E++E+I +I+K NP++K P DYRP     +L +P+
Subjt:  QNNEL-----LELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV

AT5G51300.3 splicing factor-related1.0e-0429.05Show/hide
Query:  GGNESANGENEKQSQRKTKWG----------PDLTQDTA---VRKGRLIAYQTRLEQIMELLKSGTL--EVPETQDSALEAENVDDKSPGPQANNKNIQV
        GG +S  G      +RK++W           PD  +D          + A  +RL +I  +L+SG    + PE Q S          SP P  +N  I++
Subjt:  GGNESANGENEKQSQRKTKWG----------PDLTQDTA---VRKGRLIAYQTRLEQIMELLKSGTL--EVPETQDSALEAENVDDKSPGPQANNKNIQV

Query:  QNNEL-----LELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV
           E      L  E++E+I +I+K NP++K P DYRP     +L +P+
Subjt:  QNNEL-----LELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCAGAGGTTGAAAAGACATCTCATATTGAACCTGGAAATGCAAAGATCTCTGGAGCAACTATTTCATCTGCTGCACCAATGGGAAGCCAAAAGGTTTCCATGTT
TGCAGCAAAGACTGGATTTGTTATACCAAAAAACAAACTTTCAGGGTCTTTGGTTCCCATCTTTCGAGTGAATAAAAAGTTGGGAGGGAATGAATCAGCTAATGGAGAAA
ATGAGAAACAGTCCCAAAGAAAAACAAAGTGGGGTCCTGATTTAACACAGGATACTGCAGTCAGAAAGGGGAGGCTCATAGCTTATCAGACTCGATTGGAACAAATCATG
GAACTCCTTAAGTCTGGAACTTTGGAGGTTCCAGAGACACAAGATTCAGCATTAGAAGCTGAGAATGTAGATGATAAGTCTCCTGGACCCCAAGCGAATAATAAGAATAT
ACAGGTGCAGAACAATGAACTTTTGGAGCTTGAAAAACGTGAAGTTATTGGTGAAATACTAAAACTGAATCCAAGTTATAAGGCCCCTCCTGATTATAGGCCCTTGTTGA
AAGAGGACAGGTTACTTCTCCCGGTGCCCAAGGATTTGAGCCCATGA
mRNA sequenceShow/hide mRNA sequence
CTTGTGTTGTCTGAAGCCATTTCCCGGAGCACTTGCTTGCTGCTTCATGTGCTCTCGTATGTGCAGCAATTCTTCATCATTGTGGGTTCAATTCTGAAGAACATAGCGGT
TCAGGTGATTGGAGAACAATATGAGTGCAGAGGTTGAAAAGACATCTCATATTGAACCTGGAAATGCAAAGATCTCTGGAGCAACTATTTCATCTGCTGCACCAATGGGA
AGCCAAAAGGTTTCCATGTTTGCAGCAAAGACTGGATTTGTTATACCAAAAAACAAACTTTCAGGGTCTTTGGTTCCCATCTTTCGAGTGAATAAAAAGTTGGGAGGGAA
TGAATCAGCTAATGGAGAAAATGAGAAACAGTCCCAAAGAAAAACAAAGTGGGGTCCTGATTTAACACAGGATACTGCAGTCAGAAAGGGGAGGCTCATAGCTTATCAGA
CTCGATTGGAACAAATCATGGAACTCCTTAAGTCTGGAACTTTGGAGGTTCCAGAGACACAAGATTCAGCATTAGAAGCTGAGAATGTAGATGATAAGTCTCCTGGACCC
CAAGCGAATAATAAGAATATACAGGTGCAGAACAATGAACTTTTGGAGCTTGAAAAACGTGAAGTTATTGGTGAAATACTAAAACTGAATCCAAGTTATAAGGCCCCTCC
TGATTATAGGCCCTTGTTGAAAGAGGACAGGTTACTTCTCCCGGTGCCCAAGGATTTGAGCCCATGA
Protein sequenceShow/hide protein sequence
MSAEVEKTSHIEPGNAKISGATISSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDTAVRKGRLIAYQTRLEQIM
ELLKSGTLEVPETQDSALEAENVDDKSPGPQANNKNIQVQNNELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRLLLPVPKDLSP