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Tan0015536 (gene) of Snake gourd v1 genome

Gene IDTan0015536
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationLG01:9411773..9413722
RNA-Seq ExpressionTan0015536
SyntenyTan0015536
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147752.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus]1.2e-6294.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKV ASGGKKIKTD PYGINGSMNLR GLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]9.2e-6394.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR S SFKV ASGGKKIKTD PYGINGSMNLR G+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]2.0e-6597.1Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARTS SFKVEASGGKKIKTD PYGINGSMNLR GLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_023553544.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]9.2e-6393.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTD PYGINGSMNLR G+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]9.8e-6596.38Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLAR SV FKVEASGGKKIKTD PYGINGSMNLR GLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXH3 Photosystem II 10 kDa polypeptide, chloroplastic5.8e-6394.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKV ASGGKKIKTD PYGINGSMNLR GLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-6394.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR S SFKV ASGGKKIKTD PYGINGSMNLR G+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5A7VB86 Photosystem II 10 kDa polypeptide, chloroplastic9.9e-6393.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAAS+MTSVSLKPAPFTVEKSARGLPSLAR S SFKV ASGGKKIKTD PYGINGSMNLR G+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-6394.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR S SFKV ASGGKKIKTD PYGINGSMNLR G+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic9.6e-6697.1Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARTS SFKVEASGGKKIKTD PYGINGSMNLR GLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-5380.58Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S +GLPSLAR+S SFKV ASG KK+KTD PYGINGSM LR G+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic1.3e-5178.57Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTD P+GINGSM+LR G+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic6.4e-5178.72Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTS-VSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK SARGLPSL R S  SF++ ASG KKIKTD P+G+NGSM+LR G+DASGRKGKG GVY+FVDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTS-VSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD

Query:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic4.0e-5379.86Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S +GLPSL R+S SFKV ASG KK+KTD PYGINGSM LR G+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic7.3e-5581.29Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM   SLKPAPF+VEK+A +GLPSLAR+S SF+V+ASG KK+KTD PYGINGSM+LR G+DASGRK KGKGVYQFVDKYGANVDGYSPIY+T DWS
Subjt:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLV+NTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R9.2e-5378.57Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTD P+GINGSM+LR G+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCCTTCACAGTCGAGAAATCGGCGAGAGGGCTTCCGTCTCTGGCGAGAACTTCCGTCTCCTTCAAGGT
CGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACACACCCTACGGAATCAATGGTTCGATGAATTTGAGGGGCGGACTTGATGCATCGGGAAGGAAGGGAAAGGGAAAGG
GAGTGTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGTCCCATCTATGACACGAAAGACTGGTCTCCAAGTGGTGATGTCTATGTTGGTGGTACTACT
GGGTTAGCCATTTGGGCAGTGACCTTGGCTGGGCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAA
mRNA sequenceShow/hide mRNA sequence
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTCATCGATCGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCCTTCACAGTCGAGAAATCGGC
GAGAGGGCTTCCGTCTCTGGCGAGAACTTCCGTCTCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACACACCCTACGGAATCAATGGTTCGATGAATT
TGAGGGGCGGACTTGATGCATCGGGAAGGAAGGGAAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGTCCCATCTATGACACG
AAAGACTGGTCTCCAAGTGGTGATGTCTATGTTGGTGGTACTACTGGGTTAGCCATTTGGGCAGTGACCTTGGCTGGGCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAA
CACCAGTGCTTTGGTGCAGTAAGCTGGATGATGTTAAGAGTCTGTCTTTTTTCACATTAGCTTGTAGCATGTTATCATGGACAACATTATTAAGAAATTCTATGTGTAAT
TATCTGCACATTTGAGTCATAAATGCTTGGTAAGATAATTCTTCTTCTTCTTTC
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKSARGLPSLARTSVSFKVEASGGKKIKTDTPYGINGSMNLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTT
GLAIWAVTLAGLLAGGALLVYNTSALVQ