; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0015563 (gene) of Snake gourd v1 genome

Gene IDTan0015563
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG01:40659784..40660663
RNA-Seq ExpressionTan0015563
SyntenyTan0015563
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1049.02Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGST-----------------SIVREVNDVCWLHAVCQAKLAGSSGG
        MTEILSPRLYGTVCTQ                 VEIELPVPD LP     S    ST                  IVRE +DVCWLHAV +AK AG  GG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGST-----------------SIVREVNDVCWLHAVCQAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]4.4e-0850Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLS-GKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTV
        +TEILS RLYGTVCTQ                 VEIEL VPD LP     S  K+ S  IVR  +DVCWLH V +AK  G  G GVT+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLS-GKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTV

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]3.9e-0951.11Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLP--YIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY
        MTEILS  LYGTVCTQ                 VEIELPVPD LP   +   +   GS  IVRE N VCWL AV +AK  G  GGGVT +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLP--YIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]3.0e-0946.59Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY
        MTEILS RLYGTVCTQ                 VEIELPV D LP     S     ++ +   +DVCWLH+V +AK A   GGGVT +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1049.02Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGST-----------------SIVREVNDVCWLHAVCQAKLAGSSGG
        MTEILSPRLYGTVCTQ                 VEIELPVPD LP     S    ST                  IVRE +DVCWLHAV +AK AG  GG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGST-----------------SIVREVNDVCWLHAVCQAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein2.1e-0850Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLS-GKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTV
        +TEILS RLYGTVCTQ                 VEIEL VPD LP     S  K+ S  IVR  +DVCWLH V +AK  G  G GVT+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLS-GKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTV

A0A5A7VMG9 Reverse transcriptase5.9e-1149.02Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGST-----------------SIVREVNDVCWLHAVCQAKLAGSSGG
        MTEILSPRLYGTVCTQ                 VEIELPVPD LP     S    ST                  IVRE +DVCWLHAV +AK AG  GG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGST-----------------SIVREVNDVCWLHAVCQAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

A0A5D3C4P7 Retrotrans_gag domain-containing protein1.9e-0951.11Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLP--YIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY
        MTEILS  LYGTVCTQ                 VEIELPVPD LP   +   +   GS  IVRE N VCWL AV +AK  G  GGGVT +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLP--YIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY

A0A5D3CU23 Retrotrans_gag domain-containing protein1.5e-0946.59Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY
        MTEILS RLYGTVCTQ                 VEIELPV D LP     S     ++ +   +DVCWLH+V +AK A   GGGVT +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY

A0A5D3DX39 Reverse transcriptase5.9e-1149.02Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGST-----------------SIVREVNDVCWLHAVCQAKLAGSSGG
        MTEILSPRLYGTVCTQ                 VEIELPVPD LP     S    ST                  IVRE +DVCWLHAV +AK AG  GG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLPYIVFLSGKTGST-----------------SIVREVNDVCWLHAVCQAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTTTATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATATAGTATTCTTATCAGGTAAAAC
AGGGTCAACAAGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCATGCCGTCTGTCAGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAGTGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTTTATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATATAGTATTCTTATCAGGTAAAAC
AGGGTCAACAAGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCATGCCGTCTGTCAGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAGTGTATTAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDNLPYIVFLSGKTGSTSIVREVNDVCWLHAVCQAKLAGSSGGGVTVY