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Tan0015564 (gene) of Snake gourd v1 genome

Gene IDTan0015564
OrganismTrichosanthes anguina (Snake gourd v1)
Description60S ribosomal protein L28-2-like
Genome locationLG11:27512611..27514208
RNA-Seq ExpressionTan0015564
SyntenyTan0015564
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002672 - Ribosomal protein L28e
IPR029004 - Ribosomal L28e/Mak16


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581862.1 hypothetical protein SDJN03_21864, partial [Cucurbita argyrosperma subsp. sororia]4.4e-2673.4Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MA V G+L+WEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQS+LLATTK+KKQNKPSSLLHKSL+KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

KAG6606729.1 hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sororia]4.4e-2674.74Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR
        MA V G+LIWEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQSIL ATTK+KKQNKPSSLLHKSL+KKEFR
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR

XP_022949503.1 60S ribosomal protein L28-2-like [Cucurbita moschata]4.4e-2674.74Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR
        MA V G+LIWEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQSIL ATTK+KKQNKPSSLLHKSL+KKEFR
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR

XP_022956223.1 60S ribosomal protein L28-2-like [Cucurbita moschata]4.4e-2673.4Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MA V G+L+WEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQS+LLATTK+KKQNKPSSLLHKSL+KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

XP_038886678.1 60S ribosomal protein L28-2-like [Benincasa hispida]1.5e-2675.79Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR
        MA V G+LIWEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQSILLATTK+KKQNKPSSLLHKSL+KKEFR
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR

TrEMBL top hitse value%identityAlignment
A0A1S3BIE3 60S ribosomal protein L28-2-like8.2e-2656.67Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR-----
        MA V G+LIWEIVKRNN F +K+           KE NNLYNLNSYK+S LANKKTVTIQ GGKDQSILLATTK+KKQNKPSSLLHKSL+KKEFR     
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR-----

Query:  -LNQIC-NHSRFQGAHTA-TRLSPPNESSVSRELRVGSRSRCRKVVRALK
          NQ+  N+ R      A  RLS  N S   +  + G + R R+ +++ K
Subjt:  -LNQIC-NHSRFQGAHTA-TRLSPPNESSVSRELRVGSRSRCRKVVRALK

A0A6J1GC99 60S ribosomal protein L28-2-like2.2e-2674.74Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR
        MA V G+LIWEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQSIL ATTK+KKQNKPSSLLHKSL+KKEFR
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR

A0A6J1GW79 60S ribosomal protein L28-2-like2.2e-2673.4Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MA V G+L+WEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQS+LLATTK+KKQNKPSSLLHKSL+KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

A0A6J1IS47 60S ribosomal protein L28-2-like2.2e-2673.4Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MA V G+L+WEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQS+LLATTK+KKQNKPSSLLHKSL+KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

A0A6J1K7P5 60S ribosomal protein L28-2-like2.2e-2674.74Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR
        MA V G+LIWEIVKRNN F +K+           KESNNLYNLNSYK+S LANKKTVTIQ GGKDQSIL ATTK+KKQNKPSSLLHKSL+KKEFR
Subjt:  MATVLGKLIWEIVKRNNLFFMKD-----------KESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFR

SwissProt top hitse value%identityAlignment
O82204 60S ribosomal protein L28-13.4e-2159.57Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MATV G+LIWEIVK NN F +K            KE+NNL N++SYK+S LANKKTVTIQ   KDQ+++LATTK KKQNKP   ++KS++KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

Q9M0E2 60S ribosomal protein L28-28.2e-2361.7Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MATV G+LIWEIVKRNN F +K            KESNNL N+NSYK+S LANKKTVTIQ  GKDQ ++L TTK K+QNKP   ++KS++KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

Arabidopsis top hitse value%identityAlignment
AT2G19730.1 Ribosomal L28e protein family2.4e-2259.57Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MATV G+LIWEIVK NN F +K            KE+NNL N++SYK+S LANKKTVTIQ   KDQ+++LATTK KKQNKP   ++KS++KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

AT2G19730.2 Ribosomal L28e protein family2.4e-2259.57Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MATV G+LIWEIVK NN F +K            KE+NNL N++SYK+S LANKKTVTIQ   KDQ+++LATTK KKQNKP   ++KS++KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

AT2G19730.3 Ribosomal L28e protein family2.4e-2259.57Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MATV G+LIWEIVK NN F +K            KE+NNL N++SYK+S LANKKTVTIQ   KDQ+++LATTK KKQNKP   ++KS++KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

AT4G29410.1 Ribosomal L28e protein family5.8e-2461.7Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MATV G+LIWEIVKRNN F +K            KESNNL N+NSYK+S LANKKTVTIQ  GKDQ ++L TTK K+QNKP   ++KS++KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF

AT4G29410.2 Ribosomal L28e protein family5.8e-2461.7Show/hide
Query:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF
        MATV G+LIWEIVKRNN F +K            KESNNL N+NSYK+S LANKKTVTIQ  GKDQ ++L TTK K+QNKP   ++KS++KKEF
Subjt:  MATVLGKLIWEIVKRNNLFFMK-----------DKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACAGTTCTAGGAAAACTCATTTGGGAGATTGTGAAGAGGAACAACTTGTTTTTTATGAAGGACAAGGAGTCTAACAACTTGTACAATCTAAACTCCTACAAGTA
CTCTGATTTGGCCAACAAGAAAACTGTTACAATTCAACTGGGAGGCAAAGATCAATCAATTTTGCTTGCAACAACTAAGAACAAGAAACAGAACAAACCTTCTTCATTGC
TTCATAAATCTTTGATAAAGAAAGAGTTTCGACTGAACCAAATCTGCAACCACTCTCGCTTTCAAGGGGCTCACACTGCAACACGACTCTCACCGCCGAACGAATCATCG
GTATCGCGCGAGTTAAGGGTCGGAAGTCGTAGCCGCTGTCGGAAGGTGGTGCGAGCACTGAAGCTTCGTCGATGTCCAGTGGGTCGCGTGCCGCCTGAAGTCGTGCAACC
CAGCTGCCGGAATTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACAGTTCTAGGAAAACTCATTTGGGAGATTGTGAAGAGGAACAACTTGTTTTTTATGAAGGACAAGGAGTCTAACAACTTGTACAATCTAAACTCCTACAAGTA
CTCTGATTTGGCCAACAAGAAAACTGTTACAATTCAACTGGGAGGCAAAGATCAATCAATTTTGCTTGCAACAACTAAGAACAAGAAACAGAACAAACCTTCTTCATTGC
TTCATAAATCTTTGATAAAGAAAGAGTTTCGACTGAACCAAATCTGCAACCACTCTCGCTTTCAAGGGGCTCACACTGCAACACGACTCTCACCGCCGAACGAATCATCG
GTATCGCGCGAGTTAAGGGTCGGAAGTCGTAGCCGCTGTCGGAAGGTGGTGCGAGCACTGAAGCTTCGTCGATGTCCAGTGGGTCGCGTGCCGCCTGAAGTCGTGCAACC
CAGCTGCCGGAATTTCTGA
Protein sequenceShow/hide protein sequence
MATVLGKLIWEIVKRNNLFFMKDKESNNLYNLNSYKYSDLANKKTVTIQLGGKDQSILLATTKNKKQNKPSSLLHKSLIKKEFRLNQICNHSRFQGAHTATRLSPPNESS
VSRELRVGSRSRCRKVVRALKLRRCPVGRVPPEVVQPSCRNF