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Tan0015602 (gene) of Snake gourd v1 genome

Gene IDTan0015602
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG01:15617976..15620213
RNA-Seq ExpressionTan0015602
SyntenyTan0015602
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023899902.1 uncharacterized protein LOC112011793 [Quercus suber]6.0e-0737.08Show/hide
Query:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVK
        +F      G+G +IR+++G  M  +S+ IP +  +  VE I  R AL+ A+ELGF ++EVE DS  V+N I  +  + S +G ++++VK
Subjt:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVK

XP_023916941.1 uncharacterized protein LOC112028476 [Quercus suber]2.1e-0736.73Show/hide
Query:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC
        +F   +  G+G VIRDE G  +  +S+ IP    V  VEA+  R ALI A+E+  ++ EVE DS  VI  ++  + N++ +G II +++ L   M+ C
Subjt:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC

XP_030925021.1 uncharacterized protein LOC115952076 [Quercus lobata]7.8e-0738.46Show/hide
Query:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKEL
        IF +++   +G V+RD+ G  + T+S+ IP  T V TVE I  R AL  A+ELGF ++ VE D  ++I  I ++    S +G I+E++  L
Subjt:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKEL

XP_030964152.1 uncharacterized protein LOC115985344 [Quercus lobata]1.0e-0636.67Show/hide
Query:  ATIFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEV
        A  FR+ N  G+G ++RD  G  +  +S PIP    V  VEA+  R A+  A E+G  ++  E DS +VIN I   + +Q+  G +IE++
Subjt:  ATIFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEV

XP_030969974.1 uncharacterized protein LOC115990267 [Quercus lobata]2.7e-0733.67Show/hide
Query:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC
        IF+  N+ G+G V+RD +G  +  +++ +  +     +EA+ +R A+  A E  F  + +E+DS  V+  I    +    IG IIE+VK L +TMK+C
Subjt:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC

TrEMBL top hitse value%identityAlignment
A0A2N9EUT1 Uncharacterized protein9.9e-0833.67Show/hide
Query:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC
        +F      G+G VIRDE G  M ++S+ +P+      VEA+ +R A+ +A E+GFY + VE DS M++  +     + +  G ++E+V+ L + M +C
Subjt:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC

A0A2N9HKV4 Uncharacterized protein9.9e-0833.67Show/hide
Query:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC
        +F      G+G VIRDE G  M ++S+ +P+      VEA+ +R A+ +A E+GFY + VE DS M++  +     + +  G ++E+V+ L + M +C
Subjt:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC

A0A2N9I6L8 Reverse transcriptase domain-containing protein9.9e-0833.67Show/hide
Query:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC
        +F      G+G VIRDE G  M ++S+ +P+      VEA+ +R A+ +A E+GFY + VE DS M++  +     + +  G ++E+V+ L + M +C
Subjt:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC

A0A7N2KZZ0 RNase H domain-containing protein4.0e-0937.11Show/hide
Query:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKN
        IF +++  G+  V+RD+ G  + ++S+ IP  T V  VE I  R AL++ARELGF ++ VE DS ++I  I ++    S++G I+E+++ L R+  +
Subjt:  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKN

A0A7N2N1F3 RNase H domain-containing protein3.4e-0834Show/hide
Query:  ATIFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC
        A +F++ +  G+G +IRD +G+ +  +S P P  T V  +EA+  R A++ A+E+G  Q+  E DS MVI  + Q     +E G II++++ L      C
Subjt:  ATIFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGATCAAGATTCCCCTCGCTATGCAACTATATTTAGAAGTGAAAATCGAGGTGGAATGGGTGCAGTGATACGGGATGAAAGGGGAAATGAGATGTTTACCGTATC
CAAACCAATTCCATGGATTACAGGCGTGGTGACTGTGGAAGCAATCACAGTTAGAGATGCGTTGATTATGGCAAGAGAACTGGGATTTTATCAACTGGAAGTAGAAACGG
ACTCAACGATGGTGATCAACCTCATACATCAAGAACGTCAAAATCAATCGGAGATAGGGCAGATAATCGAAGAAGTAAAGGAATTGGAAAGGACGATGAAGAACTGTACC
CACGATCAAATGCCCTAG
mRNA sequenceShow/hide mRNA sequence
CAACAAAGTCCCACTCACCTAGTCCCCTAACTACGTTCTCTCTGTCCAGCTCCTCTCTCTCTCTCCTCTTTCTCTCTCTACCTATCTGCATGGCCTTCGTCTTCTCTCTC
TCTCCCTCTGCGGATTAGGGTTCTCTGGTTCCTTCCGCGACCTCCCTTTCTGCATGGTAGATCAAGATTCCCCTCGCTATGCAACTATATTTAGAAGTGAAAATCGAGGT
GGAATGGGTGCAGTGATACGGGATGAAAGGGGAAATGAGATGTTTACCGTATCCAAACCAATTCCATGGATTACAGGCGTGGTGACTGTGGAAGCAATCACAGTTAGAGA
TGCGTTGATTATGGCAAGAGAACTGGGATTTTATCAACTGGAAGTAGAAACGGACTCAACGATGGTGATCAACCTCATACATCAAGAACGTCAAAATCAATCGGAGATAG
GGCAGATAATCGAAGAAGTAAAGGAATTGGAAAGGACGATGAAGAACTGTACCCACGATCAAATGCCCTAGCTCATTCCTTCCCTAGCAAGACATGCAAGCACTCTGAAG
GAGGAGACGATCTGGATGGAAGAAATTCCTGACCCTTCGAGAGCTCTCTACGAAATGGAGAGAAATGAAGTTTGCACTGAAGACAACTTTTATTTTCTTTAATTATTTCT
TGTAATCCGATATTCATCAAAAAAAAGAAAAAAAAATCAATCTCAGTCTATCTATAAAATATTAGACATATTCATTAAATCTATGAAATATACTAAAAGAAAAATAGAAA
ATATCCACCTTCATTGAAGAGAAAATATTTTAAAATAAA
Protein sequenceShow/hide protein sequence
MVDQDSPRYATIFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNCT
HDQMP