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Tan0015642 (gene) of Snake gourd v1 genome

Gene IDTan0015642
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG08:30785856..30786107
RNA-Seq ExpressionTan0015642
SyntenyTan0015642
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-2170.67Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EG SVREHVL+MM HFNVAE+NGAVIDE SQV+FI++SL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-2170.67Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EG SVREHVL+MM HFNVAE+NGAVIDE SQV+FI++SL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
TYK28896.1 gag/pol protein [Cucumis melo var. makuwa]6.2e-2272Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EG SVREHVL+MM HFNVAE+NGAVIDE SQV+FI+KSL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
XP_038876370.1 uncharacterized protein LOC120068812, partial [Benincasa hispida]2.8e-2276Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        MVTAKEIM SLQ +FGQPSSS  +DAIK+VYN RMKEG +VREHVLDMM HFN+ EVN AV++EKSQV FIM+SL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
XP_038880476.1 uncharacterized protein LOC120072136 [Benincasa hispida]1.1e-2174.67Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        MV AKEIM SLQ +FGQPSSS  +DAIKYVYN RMKEG +VREHVLDMM HFN+ EVNGAV++EK+Q  FIM+SL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein8.7e-2270.67Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EG SVREHVL+MM HFNVAE+NGAVIDE SQV+FI++SL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
A0A5A7TU93 Gag/pol protein8.7e-2270.67Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EG SVREHVL+MM HFNVAE+NGAVIDE SQV+FI++SL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
A0A5A7V4M1 Gag/pol protein8.7e-2270.67Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EG SVREHVL+MM HFNVAE+NGAVIDE SQV+FI++SL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
A0A5D3CPJ6 Gag/pol protein8.7e-2270.67Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EG SVREHVL+MM HFNVAE+NGAVIDE SQV+FI++SL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
A0A5D3DYU3 Gag/pol protein3.0e-2272Show/hide
Query:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
        M+TA+EIM SLQ MFGQ S  + +DA+KY+YN+RM EG SVREHVL+MM HFNVAE+NGAVIDE SQV+FI+KSL
Subjt:  MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCACCGCAAAGGAGATCATGGGATCATTACAGCCGATGTTTGGACAACCATCCTCATCGGTCCATTATGATGCTATCAAATACGTTTACAACTCCCGTATGAAGGA
GGGAGGCTCTGTTAGGGAACATGTCCTTGACATGATGACCCACTTCAACGTGGCTGAAGTAAATGGGGCAGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGAAAT
CTCTTAGAAGAGTTTTACGCCATCCACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCACCGCAAAGGAGATCATGGGATCATTACAGCCGATGTTTGGACAACCATCCTCATCGGTCCATTATGATGCTATCAAATACGTTTACAACTCCCGTATGAAGGA
GGGAGGCTCTGTTAGGGAACATGTCCTTGACATGATGACCCACTTCAACGTGGCTGAAGTAAATGGGGCAGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGAAAT
CTCTTAGAAGAGTTTTACGCCATCCACTTTAA
Protein sequenceShow/hide protein sequence
MVTAKEIMGSLQPMFGQPSSSVHYDAIKYVYNSRMKEGGSVREHVLDMMTHFNVAEVNGAVIDEKSQVTFIMKSLRRVLRHPL