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Tan0015650 (gene) of Snake gourd v1 genome

Gene IDTan0015650
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionArabinogalactan peptide
Genome locationLG02:77443779..77444866
RNA-Seq ExpressionTan0015650
SyntenyTan0015650
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585732.1 CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1189.09Show/hide
Query:  SLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        SLMALIALIIAVASVAAQEAPAPSPASPA+SI PSFVSAC A FVAL  GSTLRI
Subjt:  SLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

KAG6598305.1 hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia]7.9e-1485.48Show/hide
Query:  MAAVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        MA VS+ASL+ALIA++ AVASVAA EAPAPSPASPATSI PSFVSAC+AAFVALAFGSTLRI
Subjt:  MAAVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

KGN62403.1 hypothetical protein Csa_018595 [Cucumis sativus]1.8e-1385.48Show/hide
Query:  MAAVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        MAA+SK SL+ALIALI A++SVAAQEAPAPSPASPATSI PS VSACLAAF+ALAFGSTLRI
Subjt:  MAAVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

PON76670.1 Arabinogalactan peptide [Parasponia andersonii]4.6e-0661.54Show/hide
Query:  AAVSKASLMALIALIIAVASVA----AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        A+ S ASL+ L+A+I+ V SV     A EAPAPSPASPA++I+PSF+SACLAA VAL FGS +R+
Subjt:  AAVSKASLMALIALIIAVASVA----AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

PON86185.1 Arabinogalactan peptide [Trema orientale]2.7e-0662.9Show/hide
Query:  SKASLMALIALIIAVASVA----AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        S ASL+ L+A+I+ V SV     A EAPAPSPASPA++I+PSF+SACLAA VAL FGS +R+
Subjt:  SKASLMALIALIIAVASVA----AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

TrEMBL top hitse value%identityAlignment
A0A0A0LKU1 Uncharacterized protein8.5e-1485.48Show/hide
Query:  MAAVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        MAA+SK SL+ALIALI A++SVAAQEAPAPSPASPATSI PS VSACLAAF+ALAFGSTLRI
Subjt:  MAAVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

A0A2P5DTQ4 Arabinogalactan peptide2.2e-0661.54Show/hide
Query:  AAVSKASLMALIALIIAVASVA----AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        A+ S ASL+ L+A+I+ V SV     A EAPAPSPASPA++I+PSF+SACLAA VAL FGS +R+
Subjt:  AAVSKASLMALIALIIAVASVA----AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

A0A2P5EL16 Arabinogalactan peptide1.3e-0662.9Show/hide
Query:  SKASLMALIALIIAVASVA----AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        S ASL+ L+A+I+ V SV     A EAPAPSPASPA++I+PSF+SACLAA VAL FGS +R+
Subjt:  SKASLMALIALIIAVASVA----AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

A0A5N5HNG8 Uncharacterized protein7.2e-0563.49Show/hide
Query:  AVSKA-SLMALIALIIAVASV--AAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        AVSKA S++AL+A++ AV S   AAQE+PAPSP SPA SI PSFVSA +A    LAFGS LR+
Subjt:  AVSKA-SLMALIALIIAVASV--AAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

Q96504 CRG162.5e-0559.38Show/hide
Query:  MAAVSKASLMALIALIIAVASVA---AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLR
        MAAVSK S MAL+A++ AV SVA   + E+PAP PASPA S+ PS   AC+ AF+AL FGS L+
Subjt:  MAAVSKASLMALIALIIAVASVA---AQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLR

SwissProt top hitse value%identityAlignment
Q9LYF6 Arabinogalactan protein 153.7e-0656.67Show/hide
Query:  AVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        A+SKAS++ L+ +II+V + A  EAPAPSP S +++I+ SFVSA +AA  AL FGS LRI
Subjt:  AVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI

Arabidopsis top hitse value%identityAlignment
AT5G11740.1 arabinogalactan protein 152.6e-0756.67Show/hide
Query:  AVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI
        A+SKAS++ L+ +II+V + A  EAPAPSP S +++I+ SFVSA +AA  AL FGS LRI
Subjt:  AVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTTTCCAAAGCTTCTCTCATGGCTCTCATTGCTCTCATCATCGCCGTCGCTTCCGTCGCCGCTCAGGAGGCTCCGGCACCTAGCCCTGCCTCCCCTGCTAC
CTCCATTACTCCCTCCTTCGTCTCCGCTTGCCTCGCTGCCTTCGTCGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA
mRNA sequenceShow/hide mRNA sequence
CTCATTTCCAACCAAAGAGGTCTTCTCTCAGTCTTTCGTCTTTCAAATCCCTCTCTTCCTCTCGCCGGAACCCTAACGTTTACCAGTATCTGAATCAATGGCCGCCGTTT
CCAAAGCTTCTCTCATGGCTCTCATTGCTCTCATCATCGCCGTCGCTTCCGTCGCCGCTCAGGAGGCTCCGGCACCTAGCCCTGCCTCCCCTGCTACCTCCATTACTCCC
TCCTTCGTCTCCGCTTGCCTCGCTGCCTTCGTCGCTCTCGCCTTCGGATCTACTCTCAGGATCTGAGCTACCGACGCCTCACGATATGGTGACTGATTTTGCCATGATTC
TCGATGCATTTGTGCCTGCTTTTTTTTTTCTTCGTTTCTGGAAGTAACCTAGGGGGATTTGTTTTAGGCGTTTTCACTGGATTTTAATTCAATTCCTACACGTTTGGTAC
AGAGGACCTCTTTTGTTTACACATTCTTATATATAGAATGCAGATTGTGATGGTTTGATGATGATATATGATTTGCGCTATATTTTGTTGTTATGATTAGTAAATAAATT
GTTTCGTTCTTTTACATCTCTTCTTCTTCTTCTTCTTCTTGCCTCTCCTCTTTTATAATCCATATCGCCGCCAGCATATTATCCTTCCGAACTTCAAACTGCAAGAATAA
CCTCGAGATTCTTCCCGATCTTCCGTTTTGCTTCATTACCGTTAACAAAACAACCTGTAATTTTCACCAGAAGATTTTGTACATGGAACACCAAATCATGTTAGCAAGCG
TCTGAATCTCAGATGAAATATTTACTACGGAAGGTGGCGATTATTGATTAATTATGCAGTTCAAATATTTTGATTTTGGAGGAATTTATTTATGAACTTTGGACCAACAA
AAGTCCAATTTGTCTTGGAGTGAGTCGAAGTAGAATCTGTGGGGTCAGTGAGTGAGTGAGGCATGTGGTATGAATAAATGAGCTTGAAAGGTGCCAATATTTTAGTGGTT
GGCATTGGCAATTACAGCGAAAGAATTAATGCCGTGAACATGCTTTGCCTTTTTTGCTCTTTCCTTCTCTAAGAAGCAAATTCAAATATAAAATGGCA
Protein sequenceShow/hide protein sequence
MAAVSKASLMALIALIIAVASVAAQEAPAPSPASPATSITPSFVSACLAAFVALAFGSTLRI