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Tan0015666 (gene) of Snake gourd v1 genome

Gene IDTan0015666
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy1-copia retrotransposon protein
Genome locationLG02:82413262..82413501
RNA-Seq ExpressionTan0015666
SyntenyTan0015666
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.8e-2371.62Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        +D +K+  DN+TVRGHLLNHM+D +FDLFVVQKS K IW +LES YG DDAGR+KYVV KWLQFQM D+KP+ME
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.8e-2371.62Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        +D +K+  DN+TVRGHLLNHM+D +FDLFVVQKS K IW +LES YG DDAGR+KYVV KWLQFQM D+KP+ME
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
XP_008456453.1 PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]5.3e-2370.27Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        +D +K+  DN+TVRGHLLNHM+D +FDLFVVQKS K IW +LES YG DDAGR+KYVV KWLQFQM D+KP++E
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]3.9e-2678.38Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        V++DKFE DN+T+RGHLLNHM D LFDLFVVQKS KVIWD+LES YG DDAGRRKYVV KWLQFQM D+KP+M+
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]1.4e-2678.38Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        +++DKFE DN+TVRGHLLNHM D+LFDLFVVQKS KVIWD+LES YG DDAGRRKYVV KWLQFQM D+KP+M+
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
TrEMBL top hitse value%identityAlignment
A0A5A7U9X9 Ty1-copia retrotransposon protein8.9e-2471.62Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        +D +K+  DN+TVRGHLLNHM+D +FDLFVVQKS K IW +LES YG DDAGR+KYVV KWLQFQM D+KP+ME
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
A0A5D3BZI1 Ty1-copia retrotransposon protein8.9e-2471.62Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        +D +K+  DN+TVRGHLLNHM+D +FDLFVVQKS K IW +LES YG DDAGR+KYVV KWLQFQM D+KP+ME
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
A0A5D3DSQ3 Ty1-copia retrotransposon protein2.6e-2370.27Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        +D +K+  DN+TVRGHLLNHM+D +FDLFVVQKS K IW +LES YG DDAGR+KYVV KWLQFQM D+KP++E
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
A0A6J1DHJ4 uncharacterized protein LOC1110211471.9e-2678.38Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        V++DKFE DN+T+RGHLLNHM D LFDLFVVQKS KVIWD+LES YG DDAGRRKYVV KWLQFQM D+KP+M+
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
A0A6J1DWN1 uncharacterized protein LOC1110251976.6e-2778.38Show/hide
Query:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        +++DKFE DN+TVRGHLLNHM D+LFDLFVVQKS KVIWD+LES YG DDAGRRKYVV KWLQFQM D+KP+M+
Subjt:  VDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G00980.1 zinc knuckle (CCHC-type) family protein4.8e-0628.57Show/hide
Query:  ANVDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQ-KSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME
        A+    K+  D+     HL+N ++D+L+  +  + K  K +WD L+  Y  D++  ++  V K+++F+M++E+P++E
Subjt:  ANVDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQ-KSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCCTGCTAATGTTGATTCTGATAAGTTTGAGAATGACAACCAGACAGTCCGAGGCCATCTCCTCAACCACATGACTGACAACCTGTTCGATCTATTCGTGGTCCA
AAAATCTACAAAGGTAATATGGGATTCTTTAGAGTCAAGCTATGGTAGAGATGATGCAGGCAGAAGAAAATATGTTGTCAGCAAATGGCTACAGTTCCAAATGCTCGACG
AAAAACCACTGATGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCCCTGCTAATGTTGATTCTGATAAGTTTGAGAATGACAACCAGACAGTCCGAGGCCATCTCCTCAACCACATGACTGACAACCTGTTCGATCTATTCGTGGTCCA
AAAATCTACAAAGGTAATATGGGATTCTTTAGAGTCAAGCTATGGTAGAGATGATGCAGGCAGAAGAAAATATGTTGTCAGCAAATGGCTACAGTTCCAAATGCTCGACG
AAAAACCACTGATGGAGTAG
Protein sequenceShow/hide protein sequence
MIPANVDSDKFENDNQTVRGHLLNHMTDNLFDLFVVQKSTKVIWDSLESSYGRDDAGRRKYVVSKWLQFQMLDEKPLME