CuGenDBv2

Gene ID	Tan0015843
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DUF4219 domain-containing protein
Genome location	LG06:16443576..16443890
RNA-Seq Expression	Tan0015843
Synteny	Tan0015843
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0016310 - phosphorylation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016301 - kinase activity (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

AAG60117.1 copia-type polyprotein, putative [Arabidopsis thaliana]

1.3e-37

78.85

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D LRDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

CAB75469.1 copia-type reverse transcriptase-like protein [Arabidopsis thaliana]

1.3e-37

78.85

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D LRDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

PKU71906.1 hypothetical protein MA16_Dca021744 [Dendrobium catenatum]

1.7e-40

79.81

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASN M+PFQVP LN SNYDNWSIKMKALLG QDVWE++EKG+ EP+++ SLSQ Q+DSLRDSRKRDKKALYLI+QGLDDD+FEKI +AK+AKEAWEKLQ
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

XP_020688719.2 uncharacterized protein LOC110104092 [Dendrobium catenatum]

7.5e-41

78.85

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASN M+PFQVP LN SNYDNWSIKMKALLG+QDVWE++EKG+ EP+++ SLSQ Q+DSLRDSRKRDKKALYLI+QGLDDD+FEK+S+ K+AKEAWEKLQ
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

XP_028556025.1 uncharacterized protein LOC110109975 [Dendrobium catenatum]

1.2e-41

80.77

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASN M+PFQVP LN SNYDNWSIKMKALLG+QDVWE++EKG++EP+++ SLSQ Q+DSLRDSRKRDKKALYLI+QGLDDD+FEKIS+AK+AKEAWEKLQ
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

TrEMBL top hits

e value

%identity

Alignment

A0A2I0W8B3 DUF4219 domain-containing protein

8.0e-41

79.81

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASN M+PFQVP LN SNYDNWSIKMKALLG QDVWE++EKG+ EP+++ SLSQ Q+DSLRDSRKRDKKALYLI+QGLDDD+FEKI +AK+AKEAWEKLQ
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

Q9C536 Copia-type polyprotein, putative

6.4e-38

78.85

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D LRDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

Q9C739 Copia-type polyprotein, putative

6.4e-38

78.85

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D LRDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

Q9M2D1 Copia-type polyprotein

6.4e-38

78.85

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D LRDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

Q9SXB2 T28P6.8 protein

6.4e-38

78.85

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ
        MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D LRDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQ

Query:  ISYK
         SYK
Subjt:  ISYK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

2.6e-36

77.66

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Query:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKE
        MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D LRDSRKRDKKAL LIYQGLD+D FEK+ EA +AK+
Subjt:  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKE

Sequences

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CDS sequence

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ATGGCAAGTAACAACATGGTCCCGTTCCAAGTCCCAGTGCTCAACAAGAGCAACTACGATAATTGGAGCATCAAGATGAAGGCTCTCCTTGGATCACAAGATGTGTGGGA
GATAGTAGAGAAAGGGCACTCTGAGCCGGAGAATGATGGTAGTCTTTCTCAAATACAAAGGGATAGTTTGAGAGACTCAAGAAAGAGAGACAAGAAGGCTCTCTATCTAA
TCTATCAAGGATTAGATGACGATGCTTTTGAGAAGATTTCAGAAGCAAAGACGGCGAAAGAAGCATGGGAGAAGCTTCAAATATCGTACAAGTGA

mRNA sequence

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Protein sequence

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MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK

Tan0015843 (gene) of Snake gourd v1 genome