CuGenDBv2

Gene ID	Tan0015906
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotransposable element Tf2
Genome location	LG01:108212314..108212943
RNA-Seq Expression	Tan0015906
Synteny	Tan0015906
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032923.1 polyprotein [Cucumis melo var. makuwa]

2.2e-76

68.06

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW  +YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVEIQ+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

KAA0041673.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

2.9e-76

67.54

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT + +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW ++YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVE+Q+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.7e-76

67.54

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW ++YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVE+Q+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.7e-76

67.54

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW ++YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVE+Q+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

TYK28077.1 polyprotein [Cucumis melo var. makuwa]

2.2e-76

68.06

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW  +YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVEIQ+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SR64 Polyprotein

1.1e-76

68.06

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW  +YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVEIQ+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

A0A5A7UVN1 Retrotransposable element Tf2

8.2e-77

67.54

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW ++YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVE+Q+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

A0A5A7V6D1 Retrotransposable element Tf2

8.2e-77

67.54

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW ++YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVE+Q+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

A0A5D3C4Q3 Retrotransposable element Tf2

1.4e-76

67.54

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT + +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW ++YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVE+Q+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

A0A5D3DW87 Polyprotein

1.1e-76

68.06

Show/hide

Query:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR  YE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI
        FKP  Y+Y DY KAWY VFW  +YNHSWFVTFCK++YK +FPNWFQ WW YFG+S+EIFPVEIQ+S+HLF  S++SSPL+ TFRF+L+F I
Subjt:  FKPQIYSYHDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGTTATCATACTAAAACTTCTTTGGAAGAAGCCGTTATTGAACCAGAATTTGATGGCCCCACTCCACAAGAAGCATGTGGACAACTATATCCTCGAGGCTTCCAATT
TGTGCCCGAAGATATCTTTAAAACCAGAAAATTGTACGAGTTTATTCTGGTTGATACAAAATCGGCAGAGATTACTCATGTACCGGACAGAAATGATCCGGCAAGAATAA
TCTTTTCAAAATTAAAAATTTTTAGGGTCTTGACTCCATCCCACTGGCCTCAGGGGATGTCAGTCCCAAGAAAATTTTCTAGGAATTTTAAACCCCAAATATATAGCTAC
CATGACTACATGAAAGCATGGTACAATGTGTTTTGGTATGAATCATACAACCATTCTTGGTTTGTTACGTTTTGTAAAAAGTCTTACAAACATAACTTTCCAAACTGGTT
CCAAGAGTGGTGGAGTTATTTTGGAATTTCACAAGAAATTTTTCCTGTAGAAATCCAAAAATCATTTCACCTATTTTCAAATAGTGTCCATTCGTCACCGCTTGCGATGA
CGTTTAGATTCTCTTTATTTTTTTCAATTACCTTGGATTTTTTGTTGGACTCACCAACTGGCTCTAAGAGGACAATTTAA

mRNA sequence

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Protein sequence

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MSYHTKTSLEEAVIEPEFDGPTPQEACGQLYPRGFQFVPEDIFKTRKLYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRNFKPQIYSY
HDYMKAWYNVFWYESYNHSWFVTFCKKSYKHNFPNWFQEWWSYFGISQEIFPVEIQKSFHLFSNSVHSSPLAMTFRFSLFFSITLDFLLDSPTGSKRTI

Tan0015906 (gene) of Snake gourd v1 genome