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Tan0015922 (gene) of Snake gourd v1 genome

Gene IDTan0015922
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG08:68870618..68871019
RNA-Seq ExpressionTan0015922
SyntenyTan0015922
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0786498.1 hypothetical protein [Gossypium trilobum]1.6e-1141.49Show/hide
Query:  EAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVGGKDQRWMEEVP
        EA+A  + + L+ EMGF  +++E DS++++  + Q  PN+S+MG  I+EIK+ AS  +   F   DRRAN +AH +AK  ++  +D+ WMEE+P
Subjt:  EAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVGGKDQRWMEEVP

XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]1.6e-1135.59Show/hide
Query:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG
        M   T   P  T V++VE +A R  +  A E+GF  + VE DS+ V+  L    P+FS +G +++++K++AS +    F    R+ N +AH LA+ A   
Subjt:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG

Query:  GKDQRWMEEVPPESMEIY
           Q WME+VPP    +Y
Subjt:  GKDQRWMEEVPPESMEIY

XP_023889222.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber]1.6e-1135.9Show/hide
Query:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG
        M   T   P  T V++VE +A R  +  A E+GF  + VE DS+ V+  L    P+FS +G +++++K++AS +   +F    R+ N +AH LA+ A   
Subjt:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG

Query:  GKDQRWMEEVPPESMEI
           Q WME VPP   E+
Subjt:  GKDQRWMEEVPPESMEI

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]1.2e-1135.09Show/hide
Query:  PWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVGGKDQRWME
        P ++  D  E +A R+ M+ A++ GF  L +E DS +V+  L   +P+ S +G V+ +IK + S + +  F+W +R  N +AH+LAK A    +D  WME
Subjt:  PWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVGGKDQRWME

Query:  EVPPESME-IYLES
        + PP +++ ++L+S
Subjt:  EVPPESME-IYLES

XP_030924586.1 uncharacterized protein LOC115951544 [Quercus lobata]1.6e-1134.43Show/hide
Query:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG
        M TM+ + P + +    E +A R+ ++ A++ GF  L +E D+K+V+ L+     +FS +G VI++IK +A  + +  F++  R ANS+AHSLA+ A   
Subjt:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG

Query:  GKDQRWMEEVPPESME-IYLES
          D  W+E+ PP +++ +Y +S
Subjt:  GKDQRWMEEVPPESME-IYLES

TrEMBL top hitse value%identityAlignment
A0A2N9EMZ0 Reverse transcriptase domain-containing protein3.5e-1238.94Show/hide
Query:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG
        M +++ + P+   V+ VEA A    +Q A ++GF L+ +E DSK +V  L  KAP  +  G VIE+IK  A  ++  +F   +R  N++AH LAK A + 
Subjt:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG

Query:  GKDQRWMEEVPPE
           + WME VPPE
Subjt:  GKDQRWMEEVPPE

A0A2N9FA34 Uncharacterized protein9.1e-1338.94Show/hide
Query:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG
        M +++++ P+   V+ VEA A R  +Q A ++GF ++ +E DSK +V  L  KAP  +  G VIE+IK  A  ++  +F   +R  N +AH LAK A + 
Subjt:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG

Query:  GKDQRWMEEVPPE
           + WME VPPE
Subjt:  GKDQRWMEEVPPE

A0A2N9FBQ4 Reverse transcriptase domain-containing protein3.5e-1234.19Show/hide
Query:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG
        M +++++  +   V+ VEA+A R  +QLAL++GF+ +++E DS ++V  L Q   N++  G +I + K+++ ++    F   +R  N +AHSLA+ A   
Subjt:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG

Query:  GKDQRWMEEVPPESMEI
           Q WME VPP+ ++I
Subjt:  GKDQRWMEEVPPESMEI

A0A2N9HE46 Uncharacterized protein3.5e-1234.19Show/hide
Query:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG
        M +++++  +   V+ VEA+A R  +QLAL++GF+ +++E DS ++V  L Q   N++  G +I + K+++ ++    F   +R  N +AHSLA+ A   
Subjt:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG

Query:  GKDQRWMEEVPPESMEI
           Q WME VPP+ ++I
Subjt:  GKDQRWMEEVPPESMEI

A0A2N9HYE3 Reverse transcriptase domain-containing protein3.5e-1238.94Show/hide
Query:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG
        M +++ + P+   V+ VEA A    +Q A ++GF L+ +E DSK +V  L  KAP  +  G VIE+IK  A  ++  +F   +R  N++AH LAK A + 
Subjt:  MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVG

Query:  GKDQRWMEEVPPE
           + WME VPPE
Subjt:  GKDQRWMEEVPPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTACCATGACCAAGCAATTTCCTTGGCTTACGGAAGTTGATTTGGTTGAAGCAGTAGCGGTTCGTGAAGGGATGCAACTTGCACTAGAAATGGGTTTTAAGCTTCT
GAAGGTTGAAACGGATTCAAAATCAGTTGTCCATCTCCTTCAACAAAAAGCTCCAAACTTTTCAGAAATGGGTCAAGTGATTGAAGAAATCAAGATGATAGCGTCGAAAA
TGGAGAAATGCTACTTTACCTGGTGCGATCGGAGAGCTAATTCGTTAGCACACTCTTTGGCGAAGCATGCACTCGTTGGAGGCAAGGATCAACGATGGATGGAAGAAGTT
CCGCCGGAATCGATGGAGATTTACTTAGAGAGCAAGGTTGTGAAATTAGGGCTTCTGTCCAAGAAGCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTACCATGACCAAGCAATTTCCTTGGCTTACGGAAGTTGATTTGGTTGAAGCAGTAGCGGTTCGTGAAGGGATGCAACTTGCACTAGAAATGGGTTTTAAGCTTCT
GAAGGTTGAAACGGATTCAAAATCAGTTGTCCATCTCCTTCAACAAAAAGCTCCAAACTTTTCAGAAATGGGTCAAGTGATTGAAGAAATCAAGATGATAGCGTCGAAAA
TGGAGAAATGCTACTTTACCTGGTGCGATCGGAGAGCTAATTCGTTAGCACACTCTTTGGCGAAGCATGCACTCGTTGGAGGCAAGGATCAACGATGGATGGAAGAAGTT
CCGCCGGAATCGATGGAGATTTACTTAGAGAGCAAGGTTGTGAAATTAGGGCTTCTGTCCAAGAAGCCGTAG
Protein sequenceShow/hide protein sequence
MFTMTKQFPWLTEVDLVEAVAVREGMQLALEMGFKLLKVETDSKSVVHLLQQKAPNFSEMGQVIEEIKMIASKMEKCYFTWCDRRANSLAHSLAKHALVGGKDQRWMEEV
PPESMEIYLESKVVKLGLLSKKP