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Tan0015944 (gene) of Snake gourd v1 genome

Gene IDTan0015944
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG01:99392494..99406437
RNA-Seq ExpressionTan0015944
SyntenyTan0015944
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035958.1 uncharacterized protein E6C27_scaffold56G001620 [Cucumis melo var. makuwa]7.3e-1150.65Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSH
        MS++    K+   RL ++EEQM +L+EVSDS+ +LES LDEI  K D IDAVAGR++ +PIQEL +  + TL T ++
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSH

KAA0041962.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-1248.94Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTL-----RTKSHDLVASSVG-IAH
        MS++    K+   RL ++EEQM +L+EV DS+ FLESHL+EI  K D IDA+AGR++G+PIQ+L +  + TL     RT SH+   SS G +AH
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTL-----RTKSHDLVASSVG-IAH

KAA0062476.1 uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa]6.6e-1256Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTK
        MS  KQL K    RL +++EQM +L+EVSDS+ FL+S L+EI  K D IDAV  RLDG+PIQEL +  + TL TK
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTK

KAA0065910.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]5.6e-1158.46Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELM
        MS+     KS   RL +IEEQM +L+EV DS+ +LES LDEI  K+D IDAVAGR++G+PIQEL+
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELM

TYK15849.1 uncharacterized protein E5676_scaffold637G00250 [Cucumis melo var. makuwa]5.6e-1152.56Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSHD
        MS   Q +K    RL ++EEQM +L+EVSDS+ FLESHL EI  KVD IDAVAG +  +PIQEL +  + TL+T++++
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSHD

TrEMBL top hitse value%identityAlignment
A0A5A7TEV3 Reverse transcriptase1.9e-1248.94Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTL-----RTKSHDLVASSVG-IAH
        MS++    K+   RL ++EEQM +L+EV DS+ FLESHL+EI  K D IDA+AGR++G+PIQ+L +  + TL     RT SH+   SS G +AH
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTL-----RTKSHDLVASSVG-IAH

A0A5A7VFC8 Senescence-specific cysteine protease sag392.7e-1158.46Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELM
        MS+     KS   RL +IEEQM +L+EV DS+ +LES LDEI  K+D IDAVAGR++G+PIQEL+
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELM

A0A5D3D074 Uncharacterized protein2.7e-1152.56Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSHD
        MS   Q +K    RL ++EEQM +L+EVSDS+ FLESHL EI  KVD IDAVAG +  +PIQEL +  + TL+T++++
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSHD

A0A5D3DUL1 Uncharacterized protein3.2e-1256Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTK
        MS  KQL K    RL +++EQM +L+EVSDS+ FL+S L+EI  K D IDAV  RLDG+PIQEL +  + TL TK
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTK

A0A5D3E568 Uncharacterized protein3.5e-1150.65Show/hide
Query:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSH
        MS++    K+   RL ++EEQM +L+EVSDS+ +LES LDEI  K D IDAVAGR++ +PIQEL +  + TL T ++
Subjt:  MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCGATGAAACAATTAAACAAGTCCCATGTGGGTCGATTAACTAAGATCGAGGAGCAGATGTTCTTCTTAATAGAAGTCTCTGACAGTGTTTGGTTTTTAGAATC
TCACTTGGATGAGATTATCTCCAAAGTCGACAAGATTGATGCGGTAGCTGGCCGATTAGATGGTATGCCCATTCAAGAATTGATGATATGTGAGTTGAGCACCTTGAGGA
CAAAGTCACACGACTTGGTGGCTTCGAGTGTGGGGATAGCTCATCAGGCTCTGTTGCCCATATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCGATGAAACAATTAAACAAGTCCCATGTGGGTCGATTAACTAAGATCGAGGAGCAGATGTTCTTCTTAATAGAAGTCTCTGACAGTGTTTGGTTTTTAGAATC
TCACTTGGATGAGATTATCTCCAAAGTCGACAAGATTGATGCGGTAGCTGGCCGATTAGATGGTATGCCCATTCAAGAATTGATGATATGTGAGTTGAGCACCTTGAGGA
CAAAGTCACACGACTTGGTGGCTTCGAGTGTGGGGATAGCTCATCAGGCTCTGTTGCCCATATAG
Protein sequenceShow/hide protein sequence
MSAMKQLNKSHVGRLTKIEEQMFFLIEVSDSVWFLESHLDEIISKVDKIDAVAGRLDGMPIQELMICELSTLRTKSHDLVASSVGIAHQALLPI