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Tan0015998 (gene) of Snake gourd v1 genome

Gene IDTan0015998
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG05:68188071..68188543
RNA-Seq ExpressionTan0015998
SyntenyTan0015998
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4266453.1 unnamed protein product [Prunus armeniaca]2.5e-0728.15Show/hide
Query:  GLGAILRDSDGEL-----------IAAGAWKGMEMV------VAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTN
        GLGA++R+++ EL           ++  A++ + M+      +  GF+ + IESD + V+KAI+     +  +G ++EE++ ++  +  V + + PR+ N
Subjt:  GLGAILRDSDGEL-----------IAAGAWKGMEMV------VAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTN

Query:  KVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDM
         VAH+L  +ALS  E       G  WL+  + +D+
Subjt:  KVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDM

KAB2602100.1 hypothetical protein D8674_003105 [Pyrus ussuriensis x Pyrus communis]8.6e-0833.6Show/hide
Query:  RVATGLGAILRDSDGELIAAGAWKGME----MVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTNKVAHKLVGW
        R+  G+G +LRDS G  + AG  K +     +  +KGF N+ IESD++ + +A+   SL L   GLI+E  + +      V   +  R  NKVAHKL  +
Subjt:  RVATGLGAILRDSDGELIAAGAWKGME----MVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTNKVAHKLVGW

Query:  ALSLRESQLWTSVGPIWLNHLIMDD
        +LS     LW    P ++  ++++D
Subjt:  ALSLRESQLWTSVGPIWLNHLIMDD

KMS97072.1 hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris]2.1e-0930.07Show/hide
Query:  NGKPQRVATGLGAILRDSDGELI-----------------AAGAWKGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVG
        NG+  RV  GLG + RD +G+++                 AA      E  +A+G+SNV +ESDA  ++ AI+    + G    +LE++ N++  +  + 
Subjt:  NGKPQRVATGLGAILRDSDGELI-----------------AAGAWKGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVG

Query:  LNYSPRSTNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDD
         ++  R  N++AH+L  WA S    ++W   GP W+  LI+ D
Subjt:  LNYSPRSTNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDD

PRQ16242.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]1.6e-0929.5Show/hide
Query:  GLGAILRDSDGELIAA-----------------GAWKGMEMVVAKGF--SNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRS
        GLGA+LR+ +G+L+ A                  A  G + ++  GF  + + +E DA+ V+  ++   +    +G ++EE+RN+   +  V   YSPR 
Subjt:  GLGAILRDSDGELIAA-----------------GAWKGMEMVVAKGF--SNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRS

Query:  TNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDMAI
         N+ AH L   AL     Q+W   GP WL+ +++ D+ I
Subjt:  TNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDMAI

XP_038704726.1 uncharacterized protein LOC120000672 [Tripterygium wilfordii]1.1e-0731.62Show/hide
Query:  ATGLGAILRDSDGELIA------AGAW-----------KGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRS
        A G+GA++RD +G++ A      AGA+           KG ++ +  G SN+ IESD+  +V AI   + +L P G IL++IR+++     V L Y+ R 
Subjt:  ATGLGAILRDSDGELIA------AGAW-----------KGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRS

Query:  TNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDD
         N+VAHKL   +++      W    P ++   ++ D
Subjt:  TNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDD

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein1.0e-0930.07Show/hide
Query:  NGKPQRVATGLGAILRDSDGELI-----------------AAGAWKGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVG
        NG+  RV  GLG + RD +G+++                 AA      E  +A+G+SNV +ESDA  ++ AI+    + G    +LE++ N++  +  + 
Subjt:  NGKPQRVATGLGAILRDSDGELI-----------------AAGAWKGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVG

Query:  LNYSPRSTNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDD
         ++  R  N++AH+L  WA S    ++W   GP W+  LI+ D
Subjt:  LNYSPRSTNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDD

A0A2P6P2U0 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein7.6e-1029.5Show/hide
Query:  GLGAILRDSDGELIAA-----------------GAWKGMEMVVAKGF--SNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRS
        GLGA+LR+ +G+L+ A                  A  G + ++  GF  + + +E DA+ V+  ++   +    +G ++EE+RN+   +  V   YSPR 
Subjt:  GLGAILRDSDGELIAA-----------------GAWKGMEMVVAKGF--SNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRS

Query:  TNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDMAI
         N+ AH L   AL     Q+W   GP WL+ +++ D+ I
Subjt:  TNKVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDMAI

A0A2P6QSB8 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein2.1e-0728.99Show/hide
Query:  GLGAILRDSDGELIAA-----------------GAWKGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTN
        G+G I R+S+G L+ A                    KG+E  V +G+S++ +E+D +  V+ ++     L  +GLI+E IR ++    + G+++  R  N
Subjt:  GLGAILRDSDGELIAA-----------------GAWKGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTN

Query:  KVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDMAIT
          AH++ G+         W  VGP WL  +I +D  IT
Subjt:  KVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDMAIT

A0A5N5FLD8 Uncharacterized protein4.2e-0833.6Show/hide
Query:  RVATGLGAILRDSDGELIAAGAWKGME----MVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTNKVAHKLVGW
        R+  G+G +LRDS G  + AG  K +     +  +KGF N+ IESD++ + +A+   SL L   GLI+E  + +      V   +  R  NKVAHKL  +
Subjt:  RVATGLGAILRDSDGELIAAGAWKGME----MVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTNKVAHKLVGW

Query:  ALSLRESQLWTSVGPIWLNHLIMDD
        +LS     LW    P ++  ++++D
Subjt:  ALSLRESQLWTSVGPIWLNHLIMDD

A0A6J5TRH5 RNase H domain-containing protein1.2e-0728.15Show/hide
Query:  GLGAILRDSDGEL-----------IAAGAWKGMEMV------VAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTN
        GLGA++R+++ EL           ++  A++ + M+      +  GF+ + IESD + V+KAI+     +  +G ++EE++ ++  +  V + + PR+ N
Subjt:  GLGAILRDSDGEL-----------IAAGAWKGMEMV------VAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTN

Query:  KVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDM
         VAH+L  +ALS  E       G  WL+  + +D+
Subjt:  KVAHKLVGWALSLRESQLWTSVGPIWLNHLIMDDM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAAGAAAGCTCACCAAAACAGGAGGAAAAATGGAAAGCCCCAGCGAGTGGCAACGGGTCTCGGGGCAATCCTCAGAGACTCTGACGGAGAGTTGATCGCTGCAGG
TGCATGGAAGGGGATGGAAATGGTGGTAGCAAAGGGTTTCTCGAACGTATGGATTGAGTCTGATGCGATGGCAGTCGTAAAGGCTATTCACATGCACTCTCTCAAATTGG
GCCCTCAAGGTCTAATTCTAGAAGAAATCAGAAATGTTATGATCATGTACAGACTTGTTGGGTTGAACTATAGTCCTAGGTCCACGAATAAAGTAGCCCATAAGCTTGTT
GGTTGGGCTTTGTCCTTAAGGGAATCTCAGTTATGGACAAGTGTTGGGCCTATTTGGCTTAATCATCTTATTATGGATGATATGGCTATTACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAAGAAAGCTCACCAAAACAGGAGGAAAAATGGAAAGCCCCAGCGAGTGGCAACGGGTCTCGGGGCAATCCTCAGAGACTCTGACGGAGAGTTGATCGCTGCAGG
TGCATGGAAGGGGATGGAAATGGTGGTAGCAAAGGGTTTCTCGAACGTATGGATTGAGTCTGATGCGATGGCAGTCGTAAAGGCTATTCACATGCACTCTCTCAAATTGG
GCCCTCAAGGTCTAATTCTAGAAGAAATCAGAAATGTTATGATCATGTACAGACTTGTTGGGTTGAACTATAGTCCTAGGTCCACGAATAAAGTAGCCCATAAGCTTGTT
GGTTGGGCTTTGTCCTTAAGGGAATCTCAGTTATGGACAAGTGTTGGGCCTATTTGGCTTAATCATCTTATTATGGATGATATGGCTATTACCTAA
Protein sequenceShow/hide protein sequence
MLKKAHQNRRKNGKPQRVATGLGAILRDSDGELIAAGAWKGMEMVVAKGFSNVWIESDAMAVVKAIHMHSLKLGPQGLILEEIRNVMIMYRLVGLNYSPRSTNKVAHKLV
GWALSLRESQLWTSVGPIWLNHLIMDDMAIT