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Tan0016060 (gene) of Snake gourd v1 genome

Gene IDTan0016060
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy1-copia retrotransposon protein
Genome locationLG05:15831564..15831875
RNA-Seq ExpressionTan0016060
SyntenyTan0016060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041580.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.9e-2158.88Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR+WS+KLLIFFEQLEVDYV TT+       T     +NP +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM++
Subjt:  LLNHMTD
KAA0044943.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.8e-2158.88Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     ++P +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM+D
Subjt:  LLNHMTD
KAA0054462.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.3e-2159.81Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     +NP +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM+D
Subjt:  LLNHMTD
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.5e-2158.88Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     ++P +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM+D
Subjt:  LLNHMTD
XP_008456453.1 PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]1.3e-2159.81Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     +NP +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM+D
Subjt:  LLNHMTD
TrEMBL top hitse value%identityAlignment
A0A1S3C3Z1 uncharacterized protein LOC1034963966.3e-2259.81Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     +NP +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM+D
Subjt:  LLNHMTD
A0A5A7SKK3 Ty1-copia retrotransposon protein3.1e-2158.88Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     ++P +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM+D
Subjt:  LLNHMTD
A0A5A7TN53 Ty1-copia retrotransposon protein1.8e-2158.88Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     ++P +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM+D
Subjt:  LLNHMTD
A0A5A7UFB4 Ty1-copia retrotransposon protein6.3e-2259.81Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     +NP +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM+D
Subjt:  LLNHMTD
A0A5D3D7X7 Ty1-copia retrotransposon protein1.4e-2158.88Show/hide
Query:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH
        MSIK   K+LPDLSKLEPLDG NYR+WS+KLLIFFEQLEVDYV TT+       T     +NP +ST       V+ Q K     DPEK+ KDN TVRGH
Subjt:  MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV---TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGH

Query:  LLNHMTD
        LLNHM++
Subjt:  LLNHMTD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCAAATTCGGGAAGGTTCTTCCAGATCTGTCGAAATTAGAGCCACTCGATGGAGCAAATTACCGTAATTGGTCCAAGAAGTTGTTGATCTTCTTCGAGCAATT
GGAGGTTGACTATGTCTTTACAACAGAATGTTTGGATCGATCCAAGCTTACTGTCGTCACTAATCCAGGCGCATCAACCGATGTAGAATTTGTCTCTGCTCAATCCAAAC
CAACCTCCGATACTGATCCTGAAAAATTTGAGAAAGATAACATGACAGTTCGGGGCCATCTACTTAACCACATGACAGATTCCCCTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATCAAATTCGGGAAGGTTCTTCCAGATCTGTCGAAATTAGAGCCACTCGATGGAGCAAATTACCGTAATTGGTCCAAGAAGTTGTTGATCTTCTTCGAGCAATT
GGAGGTTGACTATGTCTTTACAACAGAATGTTTGGATCGATCCAAGCTTACTGTCGTCACTAATCCAGGCGCATCAACCGATGTAGAATTTGTCTCTGCTCAATCCAAAC
CAACCTCCGATACTGATCCTGAAAAATTTGAGAAAGATAACATGACAGTTCGGGGCCATCTACTTAACCACATGACAGATTCCCCTGTTTGA
Protein sequenceShow/hide protein sequence
MSIKFGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVVTNPGASTDVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTDSPV