CuGenDBv2

Gene ID	Tan0016063
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein PAT1 homolog 1
Genome location	LG07:6148307..6150677
RNA-Seq Expression	Tan0016063
Synteny	Tan0016063
Gene Ontology terms	GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA (biological process) GO:0033962 - cytoplasmic mRNA processing body assembly (biological process) GO:0000932 - P-body (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7037483.1 Protein PAT1-like 1 [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-20

85.07

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST +DLTRF ANSTE    DASQYAFFGKDMEEVELGGLEDE+DDTLAAGIDEE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE

XP_008444289.1 PREDICTED: protein PAT1 homolog 1 [Cucumis melo]

2.1e-18

82.35

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST EDL RF ANSTE    DASQYAFFGKD MEEVELGGLEDE+DDTLAAGI+EE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE

XP_022940287.1 uncharacterized protein LOC111445957 isoform X1 [Cucurbita moschata]

2.2e-20

85.07

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST +DLTRF ANSTE    DASQYAFFGKDMEEVELGGLEDE+DDTLAAGIDEE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE

XP_022981086.1 uncharacterized protein LOC111480345 isoform X1 [Cucurbita maxima]

2.2e-20

85.07

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST +DLTRF ANSTE    DASQYAFFGKDMEEVELGGLEDE+DDTLAAGIDEE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE

XP_023523774.1 uncharacterized protein LOC111787912 isoform X1 [Cucurbita pepo subsp. pepo]

2.2e-20

85.07

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST +DLTRF ANSTE    DASQYAFFGKDMEEVELGGLEDE+DDTLAAGIDEE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BAS9 protein PAT1 homolog 1

9.9e-19

82.35

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST EDL RF ANSTE    DASQYAFFGKD MEEVELGGLEDE+DDTLAAGI+EE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE

A0A5A7UFS4 Protein PAT1-like protein 1

9.9e-19

82.35

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST EDL RF ANSTE    DASQYAFFGKD MEEVELGGLEDE+DDTLAAGI+EE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE

A0A5D3BUX1 Protein PAT1-like protein 1

9.9e-19

82.35

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST EDL RF ANSTE    DASQYAFFGKD MEEVELGGLEDE+DDTLAAGI+EE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE

A0A6J1FJ64 uncharacterized protein LOC111445957 isoform X1

1.1e-20

85.07

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST +DLTRF ANSTE    DASQYAFFGKDMEEVELGGLEDE+DDTLAAGIDEE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE

A0A6J1IVH7 uncharacterized protein LOC111480345 isoform X1

1.1e-20

85.07

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE
        MDGFGN  RVQVAST +DLTRF ANSTE    DASQYAFFGKDMEEVELGGLEDE+DDTLAAGIDEE
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE

SwissProt top hits

e value

%identity

Alignment

Q0WPK4 Protein PAT1 homolog

7.6e-08

51.47

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE
        MD FG    +  A   +DL +F  NST     DASQYAFFG D +EEVELGGLE+ED+     GI E+
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE

Arabidopsis top hits

e value

%identity

Alignment

AT1G79090.1 FUNCTIONS IN: molecular_function unknown

5.4e-09

51.47

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE
        MD FG    +  A   +DL +F  NST     DASQYAFFG D +EEVELGGLE+ED+     GI E+
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE

AT1G79090.2 FUNCTIONS IN: molecular_function unknown

5.4e-09

51.47

Show/hide

Query:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE
        MD FG    +  A   +DL +F  NST     DASQYAFFG D +EEVELGGLE+ED+     GI E+
Subjt:  MDGFGNEPRVQVASTCEDLTRFRANSTE----DASQYAFFGKD-MEEVELGGLEDEDDDTLAAGIDEE

AT4G14990.1 Topoisomerase II-associated protein PAT1

8.1e-05

Show/hide

Query:  DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE
        DASQY FFG+ +EEVELGGL  +DD T+   +D+E
Subjt:  DASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGGTTTCGGTAACGAACCTAGAGTTCAAGTTGCATCTACATGCGAGGATCTCACGCGTTTTCGAGCCAATTCCACGGAAGATGCATCACAGTATGCATTTTTTGG
CAAGGATATGGAGGAGGTTGAATTGGGGGGATTAGAAGATGAAGATGATGATACACTTGCTGCTGGGATTGATGAGGAGATCCTTTGCCTGAGTCGTGGTTGA

mRNA sequence

Show/hide mRNA sequence

GTTAATTTAACGTGGAGGACGAGAGGATTTTAAATATAAGGAGAACGACGGGAGTGGGAGTGGGATTTCAAAATGCTCGGAAACGGTCATCTTCCTCCTCTGTTTCTCTC
TATATCTCTGTTTTCTCTGTAAAACCCTAAAACAACAACTTCGTCTTCTCTTCTCCTTCATTTCGGTAAATTCGTTATCTCTTTTTATCGTTCCCCAATTTTGGTTTCTC
TCTCCGATTCAATTTCATTTGAACCCTTAAAAAGCCTTCTCACTGACACAGCGAAAATAAAGATCAATCCATGAGGACGACACACTAGTATTCCTCTACCATCAACTATA
CATATTTTTCCAGGCCATTTTCGTCTTCCATTTCCGCACAAACCCTAGGATTTTGACCTCGTTAGGGTTTTTTTTTTTGTTCATCATTTCTGGCTTTAGATTCGGATCCT
ATTTCGCCCTTGTTGTTCTTGTTTTATTAAGGTTAAGATTTAATTTCCATGTTCTTGCTCTTCTCCCTCTCGACTAATTGAGTCGTCGATAATGGATGGTTTCGGTAACG
AACCTAGAGTTCAAGTTGCATCTACATGCGAGGATCTCACGCGTTTTCGAGCCAATTCCACGGAAGATGCATCACAGTATGCATTTTTTGGCAAGGATATGGAGGAGGTT
GAATTGGGGGGATTAGAAGATGAAGATGATGATACACTTGCTGCTGGGATTGATGAGGAGATCCTTTGCCTGAGTCGTGGTTGATGCATTTGACTTTAACTCGGAGGGCA
CAGATTTTCCATTTCATGAAGCGCCAG

Protein sequence

Show/hide protein sequence

MDGFGNEPRVQVASTCEDLTRFRANSTEDASQYAFFGKDMEEVELGGLEDEDDDTLAAGIDEEILCLSRG

Tan0016063 (gene) of Snake gourd v1 genome