; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016071 (gene) of Snake gourd v1 genome

Gene IDTan0016071
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RADIALIS-like 3
Genome locationLG02:7744565..7746255
RNA-Seq ExpressionTan0016071
SyntenyTan0016071
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572047.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]8.1e-4291.67Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MA+ SLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDLRRIESG VPIPNYRG  NGDEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

XP_022952671.1 protein RADIALIS-like 3 [Cucurbita moschata]6.2e-4292.71Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MAS SLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG  NGDEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]4.8e-4292.71Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MAS SLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHYEILLEDL+RIESGRVPIPNYRGA NGDEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]3.3e-4394.79Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MAS SLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGA NGDEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]9.6e-4392.71Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MAS SLKQQRPETTWTAKQNKLFEKALALYDKETPERW NIA AVGGKS DEVKRHYE+LLEDLRRIESGRVPIPNYRG GN DEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein3.3e-4190.62Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MAS SLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHYEILLEDLRRIESGRVPIPNYR   N DEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

A0A1S3BHB0 protein RADIALIS-like 31.1e-4190.62Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MAS SLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHYEILLEDLR+IESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

A0A6J1C2H2 protein RADIALIS-like 33.3e-4189Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR----GAGNGDEELRLLKYLKLQ
        MAS SLKQQRPE TWTAKQNKLFEKALALYDKETPERWQNIA AVGGKSADEVKRHY+ILLEDLRRIESGRVPIPNYR     AGN DEELRLLKYLKL+
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR----GAGNGDEELRLLKYLKLQ

A0A6J1GKW1 protein RADIALIS-like 33.0e-4292.71Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MAS SLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG  NGDEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

A0A6J1ICR6 protein RADIALIS-like 32.3e-4292.71Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ
        MAS SLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHYEILLEDL+RIESGRVPIPNYRGA NGDEELRLLKYLKLQ
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.6e-2454.46Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG--DEELRLLKYLKL
        MAS S+  Q    +WTAKQNK FE+ALA YD++TP RWQN+AK VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR +G   NG   +E + ++ ++L
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG--DEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 67.9e-2455Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-----GAGNGDEELRLLKYLKL
        MAS S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+          D + R +K LK+
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-----GAGNGDEELRLLKYLKL

Q58FS3 Transcription factor RADIALIS5.7e-2264.18Show/hide
Query:  WTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG
        W+AK+NK FE+ALA+YDK+TP+RW N+A+AV G++ +EVK+HYEIL+ED++ IESG+VP PNYR  G
Subjt:  WTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG

Q6NNN0 Protein RADIALIS-like 31.0e-2360.98Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGN
        MAS S+       +WT K+NKLFE+ALA YD++TP+RW N+A+AVGGKSA+EV+RHYE+L+ D+  IESGR P PNYR  GN
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGN

Q8GW75 Protein RADIALIS-like 53.2e-2554.37Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLLKYL
        MAS S+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+AKAVG KSA+EVKRHY+IL+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.3e-2654.37Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLLKYL
        MAS S+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+AKAVG KSA+EVKRHY+IL+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

AT1G75250.1 RAD-like 62.1e-2464.1Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MAS S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

AT1G75250.2 RAD-like 65.6e-2555Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-----GAGNGDEELRLLKYLKL
        MAS S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+          D + R +K LK+
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-----GAGNGDEELRLLKYLKL

AT2G21650.1 Homeodomain-like superfamily protein7.6e-2249.51Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-GAGNG------DEELRLLKYL
        MASGS+       +WT KQNK FE+ALA+YD++TP+RW N+A+AVGGK+ +E KR Y++L+ D+  IE+G VP P+Y+   GN       DEE R ++ +
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR-GAGNG------DEELRLLKYL

Query:  KLQ
        KLQ
Subjt:  KLQ

AT4G39250.1 RAD-like 11.1e-2554.46Show/hide
Query:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG--DEELRLLKYLKL
        MAS S+  Q    +WTAKQNK FE+ALA YD++TP RWQN+AK VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR +G   NG   +E + ++ ++L
Subjt:  MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG--DEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAGGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCGAAGCAGAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAGACACCTGAGAG
ATGGCAGAATATCGCCAAGGCCGTCGGCGGGAAGTCAGCCGACGAAGTCAAACGACACTATGAGATACTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGTGTTCCTA
TTCCCAATTACAGAGGCGCCGGAAATGGAGATGAGGAGTTGAGGCTGCTCAAGTATCTTAAGCTGCAATGA
mRNA sequenceShow/hide mRNA sequence
AAAAAACCCATCTCCAAATTTTTCTTTTTTCTCTTTTCCATGGCTTCAGGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCGAAGCAGAACAAGCTGTTCGA
GAAGGCATTGGCTTTGTACGACAAAGAGACACCTGAGAGATGGCAGAATATCGCCAAGGCCGTCGGCGGGAAGTCAGCCGACGAAGTCAAACGACACTATGAGATACTCT
TGGAAGATCTCCGGCGGATCGAGTCCGGCCGTGTTCCTATTCCCAATTACAGAGGCGCCGGAAATGGAGATGAGGAGTTGAGGCTGCTCAAGTATCTTAAGCTGCAATGA
AGTTGCCTACCACTGCCATTGCCCTCTCTCAATCTCTCATCAAATTACAATGTAAATTGTTGAACACAAAAATGGTTCACTTTGGCTAGGTGGATTCATACATATTTTAC
TGTACACGTTTATCTTTTATATCATCCTTGCAATAAAAT
Protein sequenceShow/hide protein sequence
MASGSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLLKYLKLQ