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Tan0016102 (gene) of Snake gourd v1 genome

Gene IDTan0016102
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:20664519..20667077
RNA-Seq ExpressionTan0016102
SyntenyTan0016102
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]4.2e-0775.68Show/hide
Query:  ILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        + L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  ILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0685.71Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]2.7e-0682.86Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0685.71Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]3.5e-0682.86Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein2.0e-0775.68Show/hide
Query:  ILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        + L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  ILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
A0A5A7T7M6 Reverse transcriptase5.8e-0785.71Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
A0A5A7TDY3 Uncharacterized protein1.3e-0682.86Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
A0A5D3BTP3 Reverse transcriptase5.8e-0785.71Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
A0A5D3DUS7 Uncharacterized protein1.7e-0682.86Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAAAATGTAAAACTTGGGTTGCCTCCCAAGAAGCAAAGGAAGAAGAAGGAGGCCATTTTTGGTGATTTTGGGCTGGAGTTGCAGAAGGAAAGAGGAAAACTCAA
GGGAATTCATTATTGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCT
GGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAAAATGTAAAACTTGGGTTGCCTCCCAAGAAGCAAAGGAAGAAGAAGGAGGCCATTTTTGGTGATTTTGGGCTGGAGTTGCAGAAGGAAAGAGGAAAACTCAA
GGGAATTCATTATTGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCT
GGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MKKNVKLGLPPKKQRKKKEAIFGDFGLELQKERGKLKGIHYCLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS