CuGenDBv2

Gene ID	Tan0016251
Organism	Trichosanthes anguina (Snake gourd v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	LG05:82148142..82150720
RNA-Seq Expression	Tan0016251
Synteny	Tan0016251
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	IPR013219 - Ribosomal protein S27/S33, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7019771.1 RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.1e-44

93.14

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAA+NKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

4.1e-44

94.12

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_022137168.1 28S ribosomal protein S33, mitochondrial [Momordica charantia]

3.2e-44

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]

1.9e-44

94.12

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAAVNKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_038876969.1 28S ribosomal protein S33, mitochondrial [Benincasa hispida]

3.2e-44

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATN LKS+VAAAVN GVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

2.0e-44

94.12

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S33

3.4e-44

94.12

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAV+KGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1C6H4 28S ribosomal protein S33, mitochondrial

1.5e-44

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

2.0e-44

93.14

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAA+NKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

9.0e-45

94.12

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAAVNKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hits

e value

%identity

Alignment

P53305 Mitochondrial 37S ribosomal protein S27

3.0e-05

41.11

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Query:  VTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA
        V E  A+IF    NP+G+R+  K+L ++L G  VA +Y   DI K         D   +  +EQ RLS +E  KRRGKG PKK +   AA
Subjt:  VTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

5.1e-40

77.45

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLKS++++AV +GVTEARARIFGH+LNPTG RS HK+LRKKLIGDKVA+WYPYDIK +DP V+AR+E+ER+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

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CDS sequence

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ATGGCTACTAATAGCCTGAAGAGTATTGTGGCTGCAGCAGTAAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACCGGCCTACGATC
TACACACAAGCTTCTGCGCAAAAAACTCATCGGTGACAAAGTAGCTCAGTGGTATCCATACGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGC
GCTTGTCGAAGCTTGAAATGCTGAAGCGGCGCGGTAAAGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGTAATAAGTAG

mRNA sequence

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ATCAAACCAAACCAAACCAAGCGTAGGGGTTTGCTCGTGGAAAGGGGTTTTAAGAAAAATGACTCTGTAGTTCGCTGGTCTCTAGACGCTCTCAGGCTCTCCACGCCAGA
CGGCGGCGAATACCCCCTCTCTCTCCGTCAATCGCACTTGCTAATTTCCATTTCCACTTTCAGTCTCTCTCTAATTGTACATAGGGGTAAACCGGAAGAGAGAATGGCTA
CTAATAGCCTGAAGAGTATTGTGGCTGCAGCAGTAAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACCGGCCTACGATCTACACAC
AAGCTTCTGCGCAAAAAACTCATCGGTGACAAAGTAGCTCAGTGGTATCCATACGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGCGCTTGTC
GAAGCTTGAAATGCTGAAGCGGCGCGGTAAAGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGTAATAAGTAGTGACAGTGGAATTGTTCCAGCGAAGGCT
TTTATCTTTTTGTTATTTTTTCTTACCTAAGTTTAGGTCATGGACCAGGTTCCTCATAGTTGTAATGACTTCTGTTCATTAAAATTAATATGTACTCTCGAGTATGTTTC
GTTCATAATTGAGCTCCATTGAAGCAGATTAATATTTA

Protein sequence

Show/hide protein sequence

MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

Tan0016251 (gene) of Snake gourd v1 genome