; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016260 (gene) of Snake gourd v1 genome

Gene IDTan0016260
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontranscription factor PRE3-like
Genome locationLG05:71429821..71430358
RNA-Seq ExpressionTan0016260
SyntenyTan0016260
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573012.1 putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3596.67Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]1.1e-3596.67Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_016899225.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]1.4e-3596.67Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]1.1e-3596.67Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]1.4e-3595.56Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS  +RISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein5.2e-3696.67Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like6.7e-3696.67Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like1.1e-3396.51Show/hide
Query:  SRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        SRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  SRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like5.2e-3696.67Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1K5U5 transcription factor PRE3-like4.4e-3595.56Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG SRSRQS  VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL REVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI73.3e-2471.11Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS RSRSR S   RI+DEQI DLV KLQ LLPE R R +D+V +A+VLQETC+YIRSL REVDDLSERL+ELLA +D  TAQAA+IR LL
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI64.7e-2676.4Show/hide
Query:  SGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQSG  RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSL +EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI64.7e-2676.4Show/hide
Query:  SGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQSG  RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSL +EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE61.2e-2675Show/hide
Query:  MSGR--SRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQSG  RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+L REVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE35.0e-2879.57Show/hide
Query:  MSG-RSRSRQ-SGPVRISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQ SG  RIS++QI DL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIR+L REVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQ-SGPVRISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.7e-2875Show/hide
Query:  MSGR--SRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQSG  RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+L REVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.5e-2979.57Show/hide
Query:  MSG-RSRSRQ-SGPVRISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQ SG  RIS++QI DL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIR+L REVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQ-SGPVRISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT3G47710.1 BANQUO 33.4e-2466.67Show/hide
Query:  SGRSRSRQSGPVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        S +SRSRQ+G   I+DEQI DLV +L +LLPE+  NR S KVSA++VLQETC+YIR+L +EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Subjt:  SGRSRSRQSGPVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT5G15160.1 BANQUO 26.1e-2163.04Show/hide
Query:  MSGRSRSRQ-SGPVRISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS   RSRQ S   RISD+QITDL+ KL+Q +PEIR NR S+ VSA+KVLQETCNYIR+L +E DDLS+RL++LL + D  + QAA+IRSL+
Subjt:  MSGRSRSRQ-SGPVRISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSD--TAQAAIIRSLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.1e-2162.64Show/hide
Query:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLAT--SDTAQAAIIRSLL
        MS R   + S   RISD Q+ DLV KL+Q+LPEI + R SDK SA+KVLQETCNYIR+L REVD+LSERLS+LL +   D+ +AA+IRSLL
Subjt:  MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLAT--SDTAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGCAGATCTCGTTCAAGGCAATCAGGTCCTGTACGAATCAGCGATGAGCAGATCACTGACCTCGTTCACAAGCTGCAACAGCTCTTGCCCGAGATTCGTAACCG
CCACTCTGATAAGGTTTCAGCTGCGAAGGTTTTGCAAGAGACATGCAATTACATTCGAAGCCTACTCAGAGAAGTGGACGATCTGAGTGAGAGACTGTCGGAGTTGTTGG
CGACATCGGACACGGCCCAAGCAGCCATTATAAGAAGCTTGCTCACGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGCAGATCTCGTTCAAGGCAATCAGGTCCTGTACGAATCAGCGATGAGCAGATCACTGACCTCGTTCACAAGCTGCAACAGCTCTTGCCCGAGATTCGTAACCG
CCACTCTGATAAGGTTTCAGCTGCGAAGGTTTTGCAAGAGACATGCAATTACATTCGAAGCCTACTCAGAGAAGTGGACGATCTGAGTGAGAGACTGTCGGAGTTGTTGG
CGACATCGGACACGGCCCAAGCAGCCATTATAAGAAGCTTGCTCACGCAGTGA
Protein sequenceShow/hide protein sequence
MSGRSRSRQSGPVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLLREVDDLSERLSELLATSDTAQAAIIRSLLTQ