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Tan0016334 (gene) of Snake gourd v1 genome

Gene IDTan0016334
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
Genome locationLG01:109783598..109784008
RNA-Seq ExpressionTan0016334
SyntenyTan0016334
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]4.3e-0428.1Show/hide
Query:  EGAVVLSGLKSLCQIEGSALFPLIIESDCLKLILVLNHPDSDLSELRNIVGEIADEIASRTVIHFEKCPRSCNRVAHSLARIPLTHHHTPSGLDLLIPSP
        E   +  GL+   QI  S+   LI+ESDC +++ +LN+     +E+  I+ ++  E      + F   PR+CN  AH+LA+  L +  T           
Subjt:  EGAVVLSGLKSLCQIEGSALFPLIIESDCLKLILVLNHPDSDLSELRNIVGEIADEIASRTVIHFEKCPRSCNRVAHSLARIPLTHHHTPSGLDLLIPSP

Query:  LENDCNFWMGSYPLLVSSILN
             + W+G++P  V ++LN
Subjt:  LENDCNFWMGSYPLLVSSILN
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCCCTTGAAGGAGCGGTTGTCCTCTCTGGTTTGAAATCTCTTTGCCAAATTGAGGGATCTGCTCTTTTTCCTCTCATCATAGAGTCGGATTGCCTGAAACTTAT
CTTGGTGTTGAACCACCCTGATTCAGATCTCTCAGAGCTCAGAAACATTGTGGGAGAAATCGCTGATGAAATCGCCTCTCGGACGGTCATTCATTTCGAAAAGTGCCCTC
GAAGCTGCAACCGAGTGGCTCACTCTCTGGCCAGAATTCCTCTTACTCACCATCACACTCCTTCTGGCCTCGATCTCCTGATCCCTTCGCCTCTAGAAAATGATTGTAAT
TTTTGGATGGGTTCCTACCCGCTTTTGGTCTCCTCCATTCTTAATGAGGAGGTTGCATGCAATCTGGTTGGTGAAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCCCTTGAAGGAGCGGTTGTCCTCTCTGGTTTGAAATCTCTTTGCCAAATTGAGGGATCTGCTCTTTTTCCTCTCATCATAGAGTCGGATTGCCTGAAACTTAT
CTTGGTGTTGAACCACCCTGATTCAGATCTCTCAGAGCTCAGAAACATTGTGGGAGAAATCGCTGATGAAATCGCCTCTCGGACGGTCATTCATTTCGAAAAGTGCCCTC
GAAGCTGCAACCGAGTGGCTCACTCTCTGGCCAGAATTCCTCTTACTCACCATCACACTCCTTCTGGCCTCGATCTCCTGATCCCTTCGCCTCTAGAAAATGATTGTAAT
TTTTGGATGGGTTCCTACCCGCTTTTGGTCTCCTCCATTCTTAATGAGGAGGTTGCATGCAATCTGGTTGGTGAAAGTTAG
Protein sequenceShow/hide protein sequence
MKALEGAVVLSGLKSLCQIEGSALFPLIIESDCLKLILVLNHPDSDLSELRNIVGEIADEIASRTVIHFEKCPRSCNRVAHSLARIPLTHHHTPSGLDLLIPSPLENDCN
FWMGSYPLLVSSILNEEVACNLVGES