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Tan0016335 (gene) of Snake gourd v1 genome

Gene IDTan0016335
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:34192184..34192626
RNA-Seq ExpressionTan0016335
SyntenyTan0016335
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032587.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4679.17Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL
        MYSK YTKRIDNLRMP  YQPPKFQQFDGKGNPKQH+AHFVET ENA +  D L++QFVR+LKGN F  R+VSMMELTN KQRKGEP I+YINRWRALSL
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL

Query:  NYKDRLTEVSAVQMCTQGMH
        + KDRLTE+S+V+MCTQGMH
Subjt:  NYKDRLTEVSAVQMCTQGMH

KAA0055534.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4667.35Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS
        +YSK YTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ET E A T  DLL+KQFVRTLKGN FDW                           R VS
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS

Query:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH
        MMELTN +Q+KGE  I+YINRWRALSL+YKDRLTE+SAV+MCTQGMH
Subjt:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH

TYK15513.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-4877.5Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL
        MYSK YTKRIDNLR+P GYQPPKFQQFDGKGNPK+H+AHFVET ENA +  D L++QFVR LKGN F+W  VSMMELTN KQRKGEP I+YINRWRALSL
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL

Query:  NYKDRLTEVSAVQMCTQGMH
        + KD+LTE+SAV+MCTQG+H
Subjt:  NYKDRLTEVSAVQMCTQGMH

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.3e-4667.35Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVET ENA +  D L++QFVR+LKGN F+W                           R+VS
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS

Query:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH
        MMELTN KQRKGEP I+YINRWRALSL+ KDRLTE+SAV+MCTQGMH
Subjt:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.3e-4667.35Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVET ENA +  D L++QFVR+LKGN F+W                           R+VS
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS

Query:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH
        MMELTN KQRKGEP I+YINRWRALSL+ KDRLTE+SAV+MCTQGMH
Subjt:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH

TrEMBL top hitse value%identityAlignment
A0A5A7STA5 Ty3-gypsy retrotransposon protein8.7e-4779.17Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL
        MYSK YTKRIDNLRMP  YQPPKFQQFDGKGNPKQH+AHFVET ENA +  D L++QFVR+LKGN F  R+VSMMELTN KQRKGEP I+YINRWRALSL
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL

Query:  NYKDRLTEVSAVQMCTQGMH
        + KDRLTE+S+V+MCTQGMH
Subjt:  NYKDRLTEVSAVQMCTQGMH

A0A5A7T9K9 Ty3-gypsy retrotransposon protein1.5e-4666.67Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS
        MYSK YTKRID+LRMP GYQPPKFQQFDGKGNPKQH+AHFVET ENA +  D L++QFVR+LKGNTF+W                           R+VS
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS

Query:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH
        MMELTN KQRKGEP I+YINRWRALSL+ KDRLTE+SAV+MCTQGMH
Subjt:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH

A0A5A7UK68 Ty3-gypsy retrotransposon protein8.7e-4767.35Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS
        +YSK YTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ET E A T  DLL+KQFVRTLKGN FDW                           R VS
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDW---------------------------RSVS

Query:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH
        MMELTN +Q+KGE  I+YINRWRALSL+YKDRLTE+SAV+MCTQGMH
Subjt:  MMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH

A0A5D3CK73 Ty3-gypsy retrotransposon protein1.9e-4678.45Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL
        MYSKLYTKRIDNLRMP GYQPPKFQQFDGKGN KQH+AHFVET EN  +  D L++QFVR+LKGN F+WR VSMMELTN KQRKGEP I+YINRWRALSL
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL

Query:  NYKDRLTEVSAVQMCT
        + KD+LTE+SA++MCT
Subjt:  NYKDRLTEVSAVQMCT

A0A5D3CUF5 Ty3-gypsy retrotransposon protein4.6e-4877.5Show/hide
Query:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL
        MYSK YTKRIDNLR+P GYQPPKFQQFDGKGNPK+H+AHFVET ENA +  D L++QFVR LKGN F+W  VSMMELTN KQRKGEP I+YINRWRALSL
Subjt:  MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSL

Query:  NYKDRLTEVSAVQMCTQGMH
        + KD+LTE+SAV+MCTQG+H
Subjt:  NYKDRLTEVSAVQMCTQGMH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCCAAATTGTACACCAAGAGGATTGACAACTTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACGGGAAGGGCAACCCAAAGCAACACGT
TGCACATTTCGTTGAAACTGGTGAAAATGCAGTGACACACGACGATCTCTTGATGAAACAATTCGTGCGTACCTTGAAAGGAAATACTTTTGATTGGAGAAGTGTGAGTA
TGATGGAACTCACCAATGCCAAACAACGTAAAGGTGAACCTGACATCAATTATATCAATCGCTGGAGGGCTTTAAGCCTCAACTATAAAGACCGACTCACAGAGGTATCT
GCCGTTCAGATGTGCACCCAAGGTATGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACTCCAAATTGTACACCAAGAGGATTGACAACTTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACGGGAAGGGCAACCCAAAGCAACACGT
TGCACATTTCGTTGAAACTGGTGAAAATGCAGTGACACACGACGATCTCTTGATGAAACAATTCGTGCGTACCTTGAAAGGAAATACTTTTGATTGGAGAAGTGTGAGTA
TGATGGAACTCACCAATGCCAAACAACGTAAAGGTGAACCTGACATCAATTATATCAATCGCTGGAGGGCTTTAAGCCTCAACTATAAAGACCGACTCACAGAGGTATCT
GCCGTTCAGATGTGCACCCAAGGTATGCACTAG
Protein sequenceShow/hide protein sequence
MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVS
AVQMCTQGMH