CuGenDBv2

Gene ID	Tan0016373
Organism	Trichosanthes anguina (Snake gourd v1)
Description	succinate dehydrogenase subunit 6, mitochondrial-like
Genome location	LG09:57198766..57202097
RNA-Seq Expression	Tan0016373
Synteny	Tan0016373
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043495 - protein membrane anchor (molecular function)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6590149.1 Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-77

95.24

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLPPWSSSDVEEFIA +PVHGPALKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        S LAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG F
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

XP_022153276.1 succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]

2.4e-77

94.56

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLP WSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAGGVFGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNKNEGRF
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

4.8e-78

95.92

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLP WS SDVEEFIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+EGRF
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

XP_022965868.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

4.5e-76

95.83

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLP WS SDVEEFIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        SFLAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+E
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

XP_022988231.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

1.6e-76

93.88

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+ PLPPWSSSDVEEFIA +PVHGP LKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        S L GGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG F
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial

1.2e-77

94.56

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLP WSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAGGVFGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNKNEGRF
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

2.3e-78

95.92

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLP WS SDVEEFIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+EGRF
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

A0A6J1H994 succinate dehydrogenase subunit 6, mitochondrial-like

2.9e-76

93.88

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLPPWSSSD EEFIA +PVHGPALKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        S LAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NKNEG F
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like

2.2e-76

95.83

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLP WS SDVEEFIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        SFLAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+E
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

A0A6J1JGN4 succinate dehydrogenase subunit 6, mitochondrial-like

7.5e-77

93.88

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+ PLPPWSSSDVEEFIA +PVHGP LKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        S L GGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG F
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

9.3e-32

46.27

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Query:  KHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWT
        +H EG K  W++ FS LD +     R+KPLP W+ +DV+EFIASDPV+GP LK  RE+  F L G+++G     G+A KYS++ HG  L+   G + G  
Subjt:  KHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWT

Query:  FGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG
         G E+A HWYQLY+ D  GA ++F+ WW +K  G
Subjt:  FGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

3.5e-55

70.5

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLP WSSSDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAG

Query:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        GVFGWTFG E+ANH  QLY++DTM AQVKFMEWW  K++
Subjt:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

2.5e-56

70.5

Show/hide

Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLP WSSSDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAG

Query:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        GVFGWTFG E+ANH  QLY++DTM AQVKFMEWW  K++
Subjt:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

Sequences

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CDS sequence

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ATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAATTTTGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCTTTTGTCCAGCG
CGAGAAGCCCCTTCCTCCATGGTCTAGCTCCGATGTCGAGGAGTTCATTGCTTCCGACCCTGTTCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTC
TTACAGGTAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTGCATGGCGCTGGGCTGTCGTTCCTAGCGGGAGGTGTATTCGGTTGG
ACTTTTGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACACAATGGGTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAATGAGGGACGTTT
TTAA

mRNA sequence

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CACAAACACAAAAACAAAACGAGCTTTCAAGAAGGAGATTGCAGAGCTAGAACTAGAAGAGAAGAGAAGGGAAGAGAACAGCCATCAGGATTTTGCTTTCAATCGGATTA
GTTTCTAAATTCTCAATCCTAATCTGTTTTTGTTTTTCGGCGCTACAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAATTT
TGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCTTTTGTCCAGCGCGAGAAGCCCCTTCCTCCATGGTCTAGCTCCGATGTCGAGGAGTTCATTGCTTCCGACCC
TGTTCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGTAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAA
GTTTGCATGGCGCTGGGCTGTCGTTCCTAGCGGGAGGTGTATTCGGTTGGACTTTTGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACACAATGGGT
GCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAATGAGGGACGTTTTTAAACTCTGATTTGCAGTTGAAGCAGCACTCATATCGCTGCTGCTTTCTAAAATAAAAA
TCAAGTGCAACTTTGTTGAAATACAATGGTTGATTGGTTTGTTTTGCACTGAACTCTTCCAATCCAAGTTTTATCTTCTGGAAATGACTGAATTCATTTGCAAGCTTGTG
TTACAAATGTAGTCATCTTTGCCAAATACCTCCAATCCTGGGTGTTAAGGTCTAATCTAAAGCATCAGTTCTTGGCCCAAAATAAATTCACTTGTCTTGTTGAACCAATA
TATTTATATTAGCTTAGAATCAGAGGCCACAAAATTAAGCCTTACCTGAACAAGATCTATTCCATAGATAGTACGATTGTGTCCTTGAGTGCTAAGAATAACACTCCAGC
CTTCTTTCCACTCTATAATTTTGATAGCACGTTCAAATAATTGTATTTGGGTTATTTAATTTAACAATGTTAATATATCTATATATTAAATTGAAAACATACTTATGTTA
ACAAATGTGGAATGTTTAGAGAATATCTTACTTTCATTTATAGAAGCCGGA

Protein sequence

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MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGW
TFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

Tan0016373 (gene) of Snake gourd v1 genome