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Tan0016428 (gene) of Snake gourd v1 genome

Gene IDTan0016428
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG01:101269943..101270203
RNA-Seq ExpressionTan0016428
SyntenyTan0016428
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025354.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
KAA0043322.1 uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa]2.5e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.5e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
KAA0053464.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.5e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
XP_022159413.1 uncharacterized protein LOC111025834 [Momordica charantia]3.3e-2695Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQ FDGKGNPKQHIAHFVETCENAGTRGD LVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
TrEMBL top hitse value%identityAlignment
A0A5A7SI89 Ty3-gypsy retrotransposon protein1.2e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
A0A5A7TJ44 Ribonuclease H1.2e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
A0A5A7TZU9 Ribonuclease H1.2e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
A0A5A7UE14 Retrotransposon protein putative ty3-gypsy sub-class1.2e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
A0A6J1DYQ8 uncharacterized protein LOC1110258341.6e-2695Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
        MP GYQPPKFQ FDGKGNPKQHIAHFVETCENAGTRGD LVKQFVRTLKGNAFDWYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCACAGGATACCAACCTCCCAAGTTCCAACAGTTCGATGGGAAAGGTAATCCAAAGCAGCATATTGCTCATTTTGTTGAGACATGCGAGAACGCTGGGACTCGCGG
CGATCTTCTGGTCAAGCAATTCGTCCGCACACTGAAAGGAAATGCCTTTGATTGGTATACCGATTTGGAACTGAGAGACGATCGATACCGGGAACGATTCGAAGAGAGTT
CCTCAATCGCTTCTATAGTACGAGGCGAACTGTCAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCACAGGATACCAACCTCCCAAGTTCCAACAGTTCGATGGGAAAGGTAATCCAAAGCAGCATATTGCTCATTTTGTTGAGACATGCGAGAACGCTGGGACTCGCGG
CGATCTTCTGGTCAAGCAATTCGTCCGCACACTGAAAGGAAATGCCTTTGATTGGTATACCGATTTGGAACTGAGAGACGATCGATACCGGGAACGATTCGAAGAGAGTT
CCTCAATCGCTTCTATAGTACGAGGCGAACTGTCAGCATGA
Protein sequenceShow/hide protein sequence
MPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLELRDDRYRERFEESSSIASIVRGELSA