; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016436 (gene) of Snake gourd v1 genome

Gene IDTan0016436
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal RNA small subunit methyltransferase NEP1-like
Genome locationLG04:30952502..30954867
RNA-Seq ExpressionTan0016436
SyntenyTan0016436
Gene Ontology termsGO:0070475 - rRNA base methylation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0019843 - rRNA binding (molecular function)
GO:0070037 - rRNA (pseudouridine) methyltransferase activity (molecular function)
InterPro domainsIPR005304 - Ribosomal biogenesis, methyltransferase, EMG1/NEP1
IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal
IPR029028 - Alpha/beta knot methyltransferases


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44185.1 hypothetical protein Csa_016257 [Cucumis sativus]1.1e-4378.69Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSNDVNLV
        MYSRI MAGLVQAVF+RTDEGILIK+DPR  +       +   LSTKAKG   KLLQVVKNPV QYLP+NCLKIGLSSSS KVVEPRDY KTFSNDVNLV
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSNDVNLV

Query:  FVVGAMAHGKIDDENIDELISG
        FV+GAMAHGKID+ENIDELISG
Subjt:  FVVGAMAHGKIDDENIDELISG

TYK19496.1 ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa]1.7e-4474.8Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---------FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        MYSRICMAGLVQAVFVRTDEG+LIK+DPR  +           +     LSTKAKG R KLLQVVKNPV QYLP+NC+KIGLSSSS KV+EPRDY KTFS
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---------FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        ND+NLVFV+GAMAHGKIDDENIDELIS
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

XP_008448880.1 PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo]4.8e-4474.8Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---------FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        MYSRICMAGLVQAVFVRTDEG+LIK+DP   +           +     LSTKAKG R KLLQVVKNPV QYLP+NC+KIGLSSSS KV+EPRDY KTFS
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---------FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        NDVNLVFV+GAMAHGKIDDENIDELIS
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

XP_022150056.1 ribosomal RNA small subunit methyltransferase NEP1-like [Momordica charantia]3.6e-3968.5Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV------FRNHWTSFL---STKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        M+SRICMAG+V+AVF++TD GILI++DPR  +      F +  +  L   STKAKGKR KLLQ+VKNP+TQYLPINC+KIGL+SSSTKVVEPRDYF TFS
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV------FRNHWTSFL---STKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        NDVN VFV+GAM H KID E IDE+IS
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

XP_031745076.1 ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis sativus]5.9e-4275Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALVFRNHWTSF----------LSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTF
        MYSRI MAGLVQAVF+RTDEGILIK+DPR  +  +    F          LSTKAKG   KLLQVVKNPV QYLP+NCLKIGLSSSS KVVEPRDY KTF
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALVFRNHWTSF----------LSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTF

Query:  SNDVNLVFVVGAMAHGKIDDENIDELIS
        SNDVNLVFV+GAMAHGKID+ENIDELIS
Subjt:  SNDVNLVFVVGAMAHGKIDDENIDELIS

TrEMBL top hitse value%identityAlignment
A0A0A0K3C1 Uncharacterized protein5.2e-4478.69Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSNDVNLV
        MYSRI MAGLVQAVF+RTDEGILIK+DPR  +       +   LSTKAKG   KLLQVVKNPV QYLP+NCLKIGLSSSS KVVEPRDY KTFSNDVNLV
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSNDVNLV

Query:  FVVGAMAHGKIDDENIDELISG
        FV+GAMAHGKID+ENIDELISG
Subjt:  FVVGAMAHGKIDDENIDELISG

A0A1S3BLD0 ribosomal RNA small subunit methyltransferase NEP1-like2.3e-4474.8Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---------FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        MYSRICMAGLVQAVFVRTDEG+LIK+DP   +           +     LSTKAKG R KLLQVVKNPV QYLP+NC+KIGLSSSS KV+EPRDY KTFS
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---------FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        NDVNLVFV+GAMAHGKIDDENIDELIS
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

A0A5D3D7D3 Ribosomal RNA small subunit methyltransferase NEP1-like8.0e-4574.8Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---------FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        MYSRICMAGLVQAVFVRTDEG+LIK+DPR  +           +     LSTKAKG R KLLQVVKNPV QYLP+NC+KIGLSSSS KV+EPRDY KTFS
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV---------FRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        ND+NLVFV+GAMAHGKIDDENIDELIS
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

A0A6J1DAB0 ribosomal RNA small subunit methyltransferase NEP1-like1.7e-3968.5Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV------FRNHWTSFL---STKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        M+SRICMAG+V+AVF++TD GILI++DPR  +      F +  +  L   STKAKGKR KLLQ+VKNP+TQYLPINC+KIGL+SSSTKVVEPRDYF TFS
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV------FRNHWTSFL---STKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        NDVN VFV+GAM H KID E IDE+IS
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

A0A6P4CC90 ribosomal RNA small subunit methyltransferase NEP16.8e-2856.69Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV------FRNHWTSFL---STKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        M SRICMAG V  VF++TDEGILI+++P   +      F N     L   S K+KG R KLL++++NPVTQ+LPIN  KIGLS SS K V+  DY  T +
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALV------FRNHWTSFL---STKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        +D NLVFVVGAMAHGKID E +D+LIS
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

SwissProt top hitse value%identityAlignment
O35130 Ribosomal RNA small subunit methyltransferase NEP18.7e-1235.43Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        M S +  AGL+Q V++ T + +LI+++P+  + R               LS +A     KLL+V+KNPV+ + P+ C+KIG S S   + + R+     S
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        +D  +VFVVGA AHGK+  E  ++++S
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

Q06287 Ribosomal RNA small subunit methyltransferase NEP13.3e-1134.92Show/hide
Query:  SRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSND
        S I  AG +Q V+++T  GILI+++P   + R               LS ++     KLL+V+KNP+T +LP  C K+ LS  +  V+  +DY +   +D
Subjt:  SRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSND

Query:  VNLVFVVGAMAHGK--IDDENIDELI
         ++   VGAMA GK    DE +DE +
Subjt:  VNLVFVVGAMAHGK--IDDENIDELI

Q10107 Ribosomal RNA small subunit methyltransferase mra11.6e-1036.89Show/hide
Query:  AGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSNDVNLVF
        AG +Q V++ T + +LI+++P   + R               LS ++     KLL+V+KNPVT YLP NC K  LS  +   V PR Y +T   + ++  
Subjt:  AGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSNDVNLVF

Query:  VVGAMAHGKID--DENIDELIS
         +GAMAHG  D  D  +DE IS
Subjt:  VVGAMAHGKID--DENIDELIS

Q92979 Ribosomal RNA small subunit methyltransferase NEP16.6e-1235.43Show/hide
Query:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS
        M S +  AGL+Q V++ T + +LI+++P+  + R               LS +A     KLL+V+KNPV+ + P+ C+K+G S S   V + R+     S
Subjt:  MYSRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFS

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        +D  +VFVVGA AHGK+  E  ++++S
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS

Q9P8P7 Ribosomal RNA small subunit methyltransferase NEP11.4e-0933.33Show/hide
Query:  SRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSND
        S I  AG +Q V+++T  G+LI+++P   + R               LS +++  +  LL+V+KNP+T +LP  C K+ LS  + ++   +DY  T   +
Subjt:  SRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSND

Query:  VNLVFVVGAMAHGK--IDDENIDELI
         ++   VGAMA GK    DE +DE I
Subjt:  VNLVFVVGAMAHGK--IDDENIDELI

Arabidopsis top hitse value%identityAlignment
AT3G57000.1 nucleolar essential protein-related4.1e-1740.94Show/hide
Query:  SRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQ-YLPINCLKIGLSSSSTKVVEPRDYFKTF-S
        S +  AG ++AV+VRT++G+L ++ P   + R               LS  A   R KLL+ VKNP+ + +LP+N  +IG S SS K+V  + +  T   
Subjt:  SRICMAGLVQAVFVRTDEGILIKIDPRALVFRN---------HWTSFLSTKAKGKRAKLLQVVKNPVTQ-YLPINCLKIGLSSSSTKVVEPRDYFKTF-S

Query:  NDVNLVFVVGAMAHGKIDDENIDELIS
        +D + VFVVGAMAHGKID   IDE +S
Subjt:  NDVNLVFVVGAMAHGKIDDENIDELIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTCTCGAATTTGTATGGCTGGATTAGTTCAGGCTGTGTTTGTAAGAACTGACGAAGGAATTCTAATCAAAATTGATCCACGTGCACTCGTATTCCGTAATCATTG
GACGAGTTTTCTGAGCACTAAAGCCAAAGGCAAACGTGCAAAACTATTGCAAGTGGTCAAAAATCCTGTGACCCAATACTTACCTATCAATTGCTTGAAGATCGGCCTTT
CTTCAAGTTCAACAAAGGTGGTTGAACCGCGAGATTACTTCAAAACTTTCAGCAACGATGTCAATCTAGTGTTTGTGGTTGGTGCAATGGCTCATGGCAAGATCGATGAT
GAAAACATAGATGAATTGATATCAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATTTGTTATAATTAATTGTATATTTATATATACAAGAAACAAGAAACAAGAAAGAGTTATCAAACTAGTTTATGTTTCTATTTCTTGTTTTCAAAGAAACAAGAAACAAA
AATAGTTATCAAACATATTCTTGTTTCTTATTCTTAAAAAATGAGAAACAAGAAACAGGAAACAGGAAACAGGAAACAAGAACGTTATCAAACGGGGCCTAAATTCTCTC
CATCTTCAATAAATTGTTGACCTCTCCCTCCCTCAAAAAAACATTTCTACTTGCTCTGTAGCCTCACTATTTCTTTTCTTGATTAATAATTCTTCTGATGAATCTTCAGT
GCTGAGTCTAAATTAGAACCATCATAATAAGACCGTTTGTAGAGTTTCTCTGCCCATAGACCAATGCTCTTCTCAATTTCCTTCAATGAAGAGTCCACACTGGCAGCAAC
GATCTCTAACTTCCTTTCTTAATCACTCCCAGAAATTAAAGCGTTTGCTAACTTGTTGCCCATTCTTCTGGAGCTTTGTGTATGCTAGGAGGAAGGCGTGGGAGAAATTT
GTATGAGAACTGAAAATTCTGTACTACTATTCATGGTCAGTCATATACATATCATTTAAGAATGACTTAGGTCCATGCTATAAATAATATGTGAATTAATTAGGTGCCTA
AGTGTGAATGGAGGTGGTAGAGTAGGTACTGTGGGAGTACTAGAAACTTTCCCAAGAATTAGAGTTTTAGAGTTGTGTCAAGGTGGTATATTTTATAATTAGGAAGAGTT
TGATAGGGGAAAGTAAACTGTGTGGTTGGTAGCCTCTCATACCTCTGTTTGAGAAGAGGACTGTAATCTTTCTTCCTGTTTTAGTATATTGAAGCTAAAGCTTTATTAGC
TGTCATCATTCTTACGCTATTTTGATAAATTGAACTTGTGAAATGCCATGGCATGTAGTGTAGGGTTTTGAGTGTAGATCTCTTGAATGATCTAGTCATCATTTTGCAAT
ATGATTTAGGAATCATTTATGCGTGGTAGAATAAAGCAATTGAAGTATATTTTTTTGAACAAGAAACAAAGTTTTCATTGGTAGATGAAGATAAAAAAATGTTCAAAGGA
TACAAAATCCCAAAGAAAGTGAAAAGAAAACCAAACAACAAAAAGAGCAAAAATTATCCAAATATTACAGGAGCTAAAAAAAATATATTGAAGTACAAGAGGGCTAAGAA
GATTTTGATCAACCAACGAGCCAGGACAACCAAACTACTCCCACCAAGCTTCTCTCCAGAAAAAAAATAACAACCAGAAATCATTTTTGGAAAGTGCGCTAATTCCTTAA
GCACATGACTCCTTCAAAAACCCTTCAGCTGCCAATTTTTTATTCAATGAGACAAACTCCTCCACATCGATACTATTAACACTATCCAATAGATAGAGAAATATATATGC
ACCATTGAGACTGATGATTTTCAAATCCTTCACCATTAGCTAACTTCTCAAAACAAGTGGATGATCGACTCCTCAAATTCCAGATGACTTGAAACTTAAAAGGCTCTTGT
TCACATCATGTATTCTCGAATTTGTATGGCTGGATTAGTTCAGGCTGTGTTTGTAAGAACTGACGAAGGAATTCTAATCAAAATTGATCCACGTGCACTCGTATTCCGTA
ATCATTGGACGAGTTTTCTGAGCACTAAAGCCAAAGGCAAACGTGCAAAACTATTGCAAGTGGTCAAAAATCCTGTGACCCAATACTTACCTATCAATTGCTTGAAGATC
GGCCTTTCTTCAAGTTCAACAAAGGTGGTTGAACCGCGAGATTACTTCAAAACTTTCAGCAACGATGTCAATCTAGTGTTTGTGGTTGGTGCAATGGCTCATGGCAAGAT
CGATGATGAAAACATAGATGAATTGATATCAGGTTAG
Protein sequenceShow/hide protein sequence
MYSRICMAGLVQAVFVRTDEGILIKIDPRALVFRNHWTSFLSTKAKGKRAKLLQVVKNPVTQYLPINCLKIGLSSSSTKVVEPRDYFKTFSNDVNLVFVVGAMAHGKIDD
ENIDELISG