; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016516 (gene) of Snake gourd v1 genome

Gene IDTan0016516
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein
Genome locationLG01:116174748..116175603
RNA-Seq ExpressionTan0016516
SyntenyTan0016516
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591246.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]2.3e-4060.87Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKEDGDES  +KSS+KEEENVV YHS NV KVR+               +P +       T ISLELGSAMRISVLKLDGT IDVAIMNSA+LKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC
        KKKVNEMEQSKMG                       DDSSALQDFGIRNNSQV   F P    K  ++H+RRRKHRFFHGLNKC
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC

XP_004145525.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]1.3e-3859.46Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKE+GD S  MKS  K+EEN V YHSNNV KVR+               +P         T ISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKCA
        KKKVNEMEQSKMG                       DDSS LQDFGIRNNSQV   F P    K  + H+RRRKHRFFHGLNKCA
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKCA

XP_022936294.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X1 [Cucurbita moschata]2.5e-3960.33Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKEDGD S  +KSS+KEEENVV YHS NV KVR+               +P +       T ISLELGSAMRISVLKLDGT IDVAIMNSA LKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC
        KKKVNEMEQSKMG                       DDSSALQDFGIRNNSQV   F P    K  ++H+RRRKHRFFHGLNKC
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC

XP_022936297.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucurbita moschata]2.5e-3960.33Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKEDGD S  +KSS+KEEENVV YHS NV KVR+               +P +       T ISLELGSAMRISVLKLDGT IDVAIMNSA LKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC
        KKKVNEMEQSKMG                       DDSSALQDFGIRNNSQV   F P    K  ++H+RRRKHRFFHGLNKC
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC

XP_022975482.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita maxima]2.3e-4060.87Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKEDGDES  +KSS+KEEENVV YHS NV KVR+               +P +       T ISLELGSAMRISVLKLDGT IDVAIMNSA+LKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC
        KKKVNEMEQSKMG                       DDSSALQDFGIRNNSQV   F P    K  ++H+RRRKHRFFHGLNKC
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC

TrEMBL top hitse value%identityAlignment
A0A0A0L4F3 Ubiquitin_4 domain-containing protein6.1e-3959.46Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKE+GD S  MKS  K+EEN V YHSNNV KVR+               +P         T ISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKCA
        KKKVNEMEQSKMG                       DDSS LQDFGIRNNSQV   F P    K  + H+RRRKHRFFHGLNKCA
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKCA

A0A5A7VCB2 U11/U12 small nuclear ribonucleoprotein 25 kDa protein2.3e-3858.92Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKE+GD S  MKS +K+EENVV YHSNNV KVR+               +P         T ISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKCA
        K+KVNE EQSKMG                       DDSS LQDFGIRNNSQV   F P    K  + H+RRRKHRFFHGLNKCA
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKCA

A0A6J1F7W6 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X11.2e-3960.33Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKEDGD S  +KSS+KEEENVV YHS NV KVR+               +P +       T ISLELGSAMRISVLKLDGT IDVAIMNSA LKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC
        KKKVNEMEQSKMG                       DDSSALQDFGIRNNSQV   F P    K  ++H+RRRKHRFFHGLNKC
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC

A0A6J1F820 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X21.2e-3960.33Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKEDGD S  +KSS+KEEENVV YHS NV KVR+               +P +       T ISLELGSAMRISVLKLDGT IDVAIMNSA LKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC
        KKKVNEMEQSKMG                       DDSSALQDFGIRNNSQV   F P    K  ++H+RRRKHRFFHGLNKC
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC

A0A6J1IJC5 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X31.1e-4060.87Show/hide
Query:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI
        MKEDGDES  +KSS+KEEENVV YHS NV KVR+               +P +       T ISLELGSAMRISVLKLDGT IDVAIMNSA+LKDLKLAI
Subjt:  MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRI---------------IPYR-------TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAI

Query:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC
        KKKVNEMEQSKMG                       DDSSALQDFGIRNNSQV   F P    K  ++H+RRRKHRFFHGLNKC
Subjt:  KKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPIRHVKEFQKHARRRKHRFFHGLNKC

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein8.0e-0430.77Show/hide
Query:  ISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQV
        I+LE G AM + V K+DG  + V ++ +AT+ DLK AI++ V   ++ + G                       +D   L+D+GIRN  +V
Subjt:  ISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQV

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein5.3e-2452.85Show/hide
Query:  TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPI
        T +SLE GSAMR+SV+KLDG+++DVA+MNSATLKDLKL IKKKVNEMEQ+ MG                       DD++ LQD GIRNNSQV   F P 
Subjt:  TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPI

Query:  RHVKEFQKHARRRKHRFFHGLNK
           K   +H++R+KHR F  L+K
Subjt:  RHVKEFQKHARRRKHRFFHGLNK

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein8.0e-0430.77Show/hide
Query:  ISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQV
        I+LE G AM + V K+DG  + V ++ +AT+ DLK AI++ V   ++ + G                       +D   L+D+GIRN  +V
Subjt:  ISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQV

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein3.6e-0431.87Show/hide
Query:  ISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQV
        I+LE G AM + V K+DG  + V ++ SAT+ DLK AI++ V   ++ + G                       +D   L+D+GIRN  +V
Subjt:  ISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQV

Arabidopsis top hitse value%identityAlignment
AT3G07860.1 Ubiquitin-like superfamily protein3.8e-2552.85Show/hide
Query:  TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPI
        T +SLE GSAMR+SV+KLDG+++DVA+MNSATLKDLKL IKKKVNEMEQ+ MG                       DD++ LQD GIRNNSQV   F P 
Subjt:  TFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMG--------------------SFFDDSSALQDFGIRNNSQVICAFCPI

Query:  RHVKEFQKHARRRKHRFFHGLNK
           K   +H++R+KHR F  L+K
Subjt:  RHVKEFQKHARRRKHRFFHGLNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGGACGGAGATGAAAGTGAAACAATGAAATCCAGCACTAAAGAAGAAGAGAATGTGGTAGCTTACCACAGCAACAACGTGAACAAAGTTAGAATCATACCTTA
TCGGACGTTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATTTCTGTCCTTAAACTCGACGGCACCGCCATTGATGTGGCAATCATGAATTCCGCGACACTGAAGGACT
TGAAACTTGCGATCAAGAAGAAAGTAAACGAAATGGAGCAATCCAAGATGGGAAGCTTCTTTGATGATAGCTCTGCGCTTCAGGATTTTGGTATCCGCAATAATTCTCAG
GTTATTTGTGCATTTTGTCCCATACGTCATGTCAAAGAATTCCAGAAGCATGCTAGAAGGAGAAAACACCGTTTCTTTCACGGTCTCAACAAGTGTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGGACGGAGATGAAAGTGAAACAATGAAATCCAGCACTAAAGAAGAAGAGAATGTGGTAGCTTACCACAGCAACAACGTGAACAAAGTTAGAATCATACCTTA
TCGGACGTTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATTTCTGTCCTTAAACTCGACGGCACCGCCATTGATGTGGCAATCATGAATTCCGCGACACTGAAGGACT
TGAAACTTGCGATCAAGAAGAAAGTAAACGAAATGGAGCAATCCAAGATGGGAAGCTTCTTTGATGATAGCTCTGCGCTTCAGGATTTTGGTATCCGCAATAATTCTCAG
GTTATTTGTGCATTTTGTCCCATACGTCATGTCAAAGAATTCCAGAAGCATGCTAGAAGGAGAAAACACCGTTTCTTTCACGGTCTCAACAAGTGTGCATGA
Protein sequenceShow/hide protein sequence
MKEDGDESETMKSSTKEEENVVAYHSNNVNKVRIIPYRTFISLELGSAMRISVLKLDGTAIDVAIMNSATLKDLKLAIKKKVNEMEQSKMGSFFDDSSALQDFGIRNNSQ
VICAFCPIRHVKEFQKHARRRKHRFFHGLNKCA