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Tan0016590 (gene) of Snake gourd v1 genome

Gene IDTan0016590
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein L37
Genome locationLG06:2350184..2351351
RNA-Seq ExpressionTan0016590
SyntenyTan0016590
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001569 - Ribosomal protein L37e
IPR011331 - Ribosomal protein L37ae/L37e
IPR011332 - Zinc-binding ribosomal protein
IPR018267 - Ribosomal protein L37e, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141772.1 60S ribosomal protein L37-3 [Cucumis sativus]6.0e-4598.95Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPRNKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

XP_021609554.1 60S ribosomal protein L37-3 [Manihot esculenta]3.9e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPR KGAA SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

XP_022953178.1 60S ribosomal protein L37-3-like [Cucurbita moschata]5.0e-4495.79Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTGTGRMRY+RHVPRRFKSGFREGT+AAPRNKG+AASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

XP_022964011.1 60S ribosomal protein L37-3-like [Cucurbita moschata]2.3e-4496.84Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTGTGRMRY+RHVPRRFKSGFREGT+AAPRNKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

XP_031252760.1 60S ribosomal protein L37-3 [Pistacia vera]3.0e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKR YNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

TrEMBL top hitse value%identityAlignment
A0A0A0K941 Ribosomal protein L372.9e-4598.95Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPRNKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

A0A1S3CGU0 Ribosomal protein L372.9e-4598.95Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPRNKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

A0A5D3BYC5 Ribosomal protein L372.9e-4598.95Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPRNKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

A0A6A6LIP3 Ribosomal protein L371.9e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPR KGAA SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

A0A6J1HHN6 Ribosomal protein L371.1e-4496.84Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTGTGRMRY+RHVPRRFKSGFREGT+AAPRNKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

SwissProt top hitse value%identityAlignment
Q43292 60S ribosomal protein L37-22.9e-4287.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+A PRNKG A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

Q8LEM8 60S ribosomal protein L37-34.9e-4286.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+A PR+K +A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

Q8LFH7 60S ribosomal protein L37-14.9e-4287.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQA PRNK AA+S+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

Q90YT1 60S ribosomal protein L379.6e-3067.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTGTGRMR+++ V RRF++GFREGT   PR    AAS+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

Q9VXX8 Probable 60S ribosomal protein L37-A5.6e-3069.57Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAA
        M KGT SFGKR NKTHTLC RCGR S+H+QKS CA C +PAA+ R YNWSVKA RRKTTGTGRM++L+ V RRF++GFREGTQA P+   A+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAA

Arabidopsis top hitse value%identityAlignment
AT1G15250.1 Zinc-binding ribosomal protein family protein3.5e-4387.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQA PRNK AA+S+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

AT1G52300.1 Zinc-binding ribosomal protein family protein2.0e-4387.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+A PRNKG A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA

AT3G16080.1 Zinc-binding ribosomal protein family protein3.5e-4386.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+A PR+K +A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGGGTACGGGCAGTTTTGGTAAGAGGAGAAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGTTTCCATCTCCAGAAGAGTAGGTGTGCAGCATG
TGCTTTCCCTGCTGCTCGCAAGCGCAAATATAACTGGAGTGTGAAGGCAATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACTTGCGCCATGTTCCGCGTAGAT
TCAAGAGCGGCTTCAGAGAGGGTACTCAAGCTGCACCCAGGAATAAGGGAGCTGCAGCATCAGCATAA
mRNA sequenceShow/hide mRNA sequence
AAATAGCCATTTTCTTTGCTGGTGTCTCCAGAGCCAAACTGCAGCTAGAATTTCTTCACCCTAGGGTTTCTTCGTCCTGCATCAATGGGAAAGGGTACGGGCAGTTTTGG
TAAGAGGAGAAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGTTTCCATCTCCAGAAGAGTAGGTGTGCAGCATGTGCTTTCCCTGCTGCTCGCAAGCGCA
AATATAACTGGAGTGTGAAGGCAATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACTTGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACT
CAAGCTGCACCCAGGAATAAGGGAGCTGCAGCATCAGCATAAAGTTTTGGAAGAAGTTCGACTCAATTTCAGTACCCCAACCATAGTCTTCAGTAGGGTTTTTACTCATC
TGAGAGTCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTTAAATGTATTGTTTTGAATTATGGACAAATGACGAATCCA
GATTGTTCGTACTCTGCAACTTGTGTTTATGCATTTTTCAGCGTGTTCTTATTTTCCCCCATACGCCCAAGGTTGTTACATGTGTTGAGAGTATCTCTGTCAAATCACTA
GATTGAATTGTTTCAATTTGAAA
Protein sequenceShow/hide protein sequence
MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA