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Tan0016616 (gene) of Snake gourd v1 genome

Gene IDTan0016616
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG11:24523084..24523531
RNA-Seq ExpressionTan0016616
SyntenyTan0016616
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-1349.44Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG
        +R+R   ESVAS +++  C +CGK H GRC+ G  VC+ CG+ GHFKR+CPQL       Q   SHTV +Q  I  A GE TS  +QKG
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.1e-1251.14Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQK
        +R R   ESVAS +R+  C +C K H G+CL G  VC+ CGQ GHFKR+CPQL       Q   SHTV +Q  I AA  EGTS  +QK
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQK

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.9e-1248.31Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG
        +R+R   +SVA+ + +  C +CGK H G+CL G  VC+ CG+ GHFKR+CPQL       QR  SHTV +Q  I  A  EGTS  +QKG
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-1349.44Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG
        +R+R   ESVAS +++  C +CGK H GRC+ G  VC+ CG+ GHFKR+CPQL       Q   SHTV +Q  I  A GE TS  +QKG
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG

WP_217833293.1 CCHC-type zinc finger protein, partial [Synechococcus sp. PCC 7002]7.4e-1958.43Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG
        SR+ +P ES ASS +KPLC T GKYHWG+C    N C+NCGQ GHFKRECPQLMQE    Q+TTSH + Q Q +     E TS  +QKG
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.8e-1349.44Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG
        +R+R   ESVAS +++  C +CGK H GRC+ G  VC+ CG+ GHFKR+CPQL       Q   SHTV +Q  I  A GE TS  +QKG
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.5e-1251.14Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQK
        +R R   ESVAS +R+  C +C K H G+CL G  VC+ CGQ GHFKR+CPQL       Q   SHTV +Q  I AA  EGTS  +QK
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQK

A0A5A7UAH6 CCHC-type domain-containing protein1.9e-1248.31Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG
        +R+R   +SVA+ + +  C +CGK H G+CL G  VC+ CG+ GHFKR+CPQL       QR  SHTV +Q  I  A  EGTS  +QKG
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG

A0A5A7UKD3 DNA/RNA polymerases superfamily protein1.6e-1148.31Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG
        +R+R   +SVAS +R+  C TCGK H G+CL G  V + CGQ GH KR+CPQL       Q   SHT+ +Q  I    GEGTS  +QKG
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG

A0A5D3BTP3 Reverse transcriptase3.8e-1349.44Show/hide
Query:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG
        +R+R   ESVAS +++  C +CGK H GRC+ G  VC+ CG+ GHFKR+CPQL       Q   SHTV +Q  I  A GE TS  +QKG
Subjt:  SRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCAGCGAGGGACTCCCGTACAAGGCAACCCAGTGAGTCAGTAGCAAGTTCAGCAAGGAAACCTTTGTGCAGCACTTGTGGAAAGTATCATTGGGGTCGATGTTT
GAGTGGCGAAAATGTATGTTTCAACTGTGGGCAAGGTGGTCACTTCAAAAGGGAATGCCCCCAATTAATGCAAGAAGGCATGGTGGGACAGAGAACTACATCGCATACTG
TGAACCAGCAGCAAAATATTGGGGCAGCTGGAGGAGAAGGCACTAGTAGTGTTAAGCAAAAAGGCGAGTAG
mRNA sequenceShow/hide mRNA sequence
CCACGAGACCGATTCCAATGAGGAGATAATAGGAGATTCACTCCAGGAGTTTCAGGAAAAGGGAGCTTTAAACCCCATCGTGGTGGGCAGTCTACTCCAAAGGACTGGTA
CAGGTGGGCGTGGGGAAAGACAGAGGCAGTAGGGATCAAGTTTCCTTATGGGATCAGCGAGGGACTCCCGTACAAGGCAACCCAGTGAGTCAGTAGCAAGTTCAGCAAGG
AAACCTTTGTGCAGCACTTGTGGAAAGTATCATTGGGGTCGATGTTTGAGTGGCGAAAATGTATGTTTCAACTGTGGGCAAGGTGGTCACTTCAAAAGGGAATGCCCCCA
ATTAATGCAAGAAGGCATGGTGGGACAGAGAACTACATCGCATACTGTGAACCAGCAGCAAAATATTGGGGCAGCTGGAGGAGAAGGCACTAGTAGTGTTAAGCAAAAAG
GCGAGTAG
Protein sequenceShow/hide protein sequence
MGSARDSRTRQPSESVASSARKPLCSTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSHTVNQQQNIGAAGGEGTSSVKQKGE