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Tan0016652 (gene) of Snake gourd v1 genome

Gene IDTan0016652
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionclassical arabinogalactan protein 1-like
Genome locationLG02:28032906..28033390
RNA-Seq ExpressionTan0016652
SyntenyTan0016652
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659718.1 classical arabinogalactan protein 10 [Cucumis sativus]5.9e-1056.9Show/hide
Query:  MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAKPPTAASPSPAVSSSSISSPPADAPAPAPATNNAVSNAF
        MAS+ I++ AL ALFLI ST AQSP+PSPKKS H  S  SP+PH +SP +SHKS  SP+      + SPSP  SS   S PPA+A APA   N+A++N F
Subjt:  MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAKPPTAASPSPAVSSSSISSPPADAPAPAPATNNAVSNAF

Query:  AIASSLFAAVSAAAVL
        A+++SLF AVSAAA L
Subjt:  AIASSLFAAVSAAAVL
XP_022141985.1 classical arabinogalactan protein 1-like [Momordica charantia]1.8e-1161.95Show/hide
Query:  MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAK----PPTAASPSPAVSSSSISSPPADAPAPAPATNNAV
        MASVR +V ALMAL LI S  AQ    SPKK  HAASPS   P + SP+VS KSA SPAT K     P ++SPSPA+  SSISSPPAD  APA A N A 
Subjt:  MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAK----PPTAASPSPAVSSSSISSPPADAPAPAPATNNAV

Query:  SNAFAIASSLFAA
        SN+FA+A SLFAA
Subjt:  SNAFAIASSLFAA
TrEMBL top hitse value%identityAlignment
A0A0A0K7F2 Uncharacterized protein2.9e-1056.9Show/hide
Query:  MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAKPPTAASPSPAVSSSSISSPPADAPAPAPATNNAVSNAF
        MAS+ I++ AL ALFLI ST AQSP+PSPKKS H  S  SP+PH +SP +SHKS  SP+      + SPSP  SS   S PPA+A APA   N+A++N F
Subjt:  MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAKPPTAASPSPAVSSSSISSPPADAPAPAPATNNAVSNAF

Query:  AIASSLFAAVSAAAVL
        A+++SLF AVSAAA L
Subjt:  AIASSLFAAVSAAAVL
A0A6J1CJM5 classical arabinogalactan protein 1-like8.9e-1261.95Show/hide
Query:  MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAK----PPTAASPSPAVSSSSISSPPADAPAPAPATNNAV
        MASVR +V ALMAL LI S  AQ    SPKK  HAASPS   P + SP+VS KSA SPAT K     P ++SPSPA+  SSISSPPAD  APA A N A 
Subjt:  MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAK----PPTAASPSPAVSSSSISSPPADAPAPAPATNNAV

Query:  SNAFAIASSLFAA
        SN+FA+A SLFAA
Subjt:  SNAFAIASSLFAA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTACGAATTTCAGTTGCAGCGCTAATGGCGCTGTTCTTGATCGCCTCCACCGTCGCCCAGTCTCCGTCGCCGTCGCCAAAGAAATCTCCCCACGCAGCCTC
TCCTTCTTCACCCACGCCCCATTCCCACTCCCCGAAGGTTTCTCACAAATCGGCGCAATCGCCGGCCACCGCTAAGCCTCCCACCGCCGCTTCGCCTTCACCGGCGGTTT
CCTCATCCTCCATCTCCTCTCCTCCCGCCGACGCTCCGGCTCCTGCTCCTGCCACTAACAATGCTGTTTCAAATGCTTTCGCCATCGCCAGTTCTCTCTTCGCCGCCGTC
TCCGCCGCTGCTGTTCTCCTCTTCTAG
mRNA sequenceShow/hide mRNA sequence
CCAAATCACACTTTCTCCCTCTCTTCCGATTCTCTCTCTCTCTAACAATCAATGGCTTCCGTACGAATTTCAGTTGCAGCGCTAATGGCGCTGTTCTTGATCGCCTCCAC
CGTCGCCCAGTCTCCGTCGCCGTCGCCAAAGAAATCTCCCCACGCAGCCTCTCCTTCTTCACCCACGCCCCATTCCCACTCCCCGAAGGTTTCTCACAAATCGGCGCAAT
CGCCGGCCACCGCTAAGCCTCCCACCGCCGCTTCGCCTTCACCGGCGGTTTCCTCATCCTCCATCTCCTCTCCTCCCGCCGACGCTCCGGCTCCTGCTCCTGCCACTAAC
AATGCTGTTTCAAATGCTTTCGCCATCGCCAGTTCTCTCTTCGCCGCCGTCTCCGCCGCTGCTGTTCTCCTCTTCTAGATCCCTCTTGGCATGCCTCTTTCTGTTTGGGA
GAATTGCTTTTTTCTTTTTTGATGTCCCAATTAATTACAATTCTG
Protein sequenceShow/hide protein sequence
MASVRISVAALMALFLIASTVAQSPSPSPKKSPHAASPSSPTPHSHSPKVSHKSAQSPATAKPPTAASPSPAVSSSSISSPPADAPAPAPATNNAVSNAFAIASSLFAAV
SAAAVLLF