; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016688 (gene) of Snake gourd v1 genome

Gene IDTan0016688
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionglycine-rich RNA-binding protein RZ1C-like
Genome locationLG11:7505473..7509112
RNA-Seq ExpressionTan0016688
SyntenyTan0016688
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR001878 - Zinc finger, CCHC-type
IPR008906 - HAT, C-terminal dimerisation domain
IPR012337 - Ribonuclease H-like superfamily
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602289.1 Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia]7.8e-4953.55Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG
        MA + EY I+VGGL+W  SERELE+AFSR+GKI++ +I  +R  GR RGFGF+TFA+RRGMD+AIREM G E  + II+VNKA  +M+G+  EPG+   G
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG

Query:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-----VKDHSDSKHDKDGC
        Y S GR SF RG  RS   DECFKCG  GHWARDCP      GR R S+ S S F+ +   D FG DR RYVD +YDGGR       +D  D + DK G 
Subjt:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-----VKDHSDSKHDKDGC

Query:  YNYHHNDRVTS
         + + +DR  S
Subjt:  YNYHHNDRVTS

XP_022133790.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia]4.1e-5055.56Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG
        MA + EY I+VGGL+W  SER+LE+AFSR+GKIL+ +I  +R  GR RGFGF+TFA+RRGMD+AIREM G+EL +  I+VNKA  +M+G+  EPG+   G
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG

Query:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-VKDHSDSKHDKDGCYNYH
        Y S GR SF RG  RS   DECFKCG  GHWARDCP V    GR R S+ S S F+ +   D FG DR RYVD +YDGGR   +DH D + DK G  + +
Subjt:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-VKDHSDSKHDKDGCYNYH

Query:  HNDRVTS
         +DR  S
Subjt:  HNDRVTS

XP_022990423.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima]7.8e-4953.55Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG
        MA + EY I+VGGL+W  SERELE+AFSR+GKI++ +I  +R  GR RGFGF+TFA+RRGMD+AIREM G E  + II+VNKA  +M+G+  EPG+   G
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG

Query:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-----VKDHSDSKHDKDGC
        Y S GR SF RG  RS   DECFKCG  GHWARDCP      GR R S+ S S F+ +   D FG DR RYVD +YDGGR       +D  D + DK G 
Subjt:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-----VKDHSDSKHDKDGC

Query:  YNYHHNDRVTS
         + + +DR  S
Subjt:  YNYHHNDRVTS

XP_038885252.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida]4.9e-5155.34Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG
        MA + EY I+VGGL+W  SER+LE+AF+RFGKIL+ +I  +R  GR RGFGF+TFA+RRGMD+AIREM GQE  + II+VNKA  +M+G+  EPG+   G
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG

Query:  YLSSGRVSFERGARSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-VKDHSDSKHDKDGCYNYHH
        Y S GR SF RG RS   DECFKCG  GHWARDCP V    GR R S+ S S F+ +   D FG DR RYVD +Y+GGR   +D  D + DK G  + + 
Subjt:  YLSSGRVSFERGARSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-VKDHSDSKHDKDGCYNYHH

Query:  NDRVTS
        +DR  S
Subjt:  NDRVTS

XP_038886145.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]2.3e-6164.95Show/hide
Query:  KVGKMTDRFREFWGDDVADKMTTKVKKTLRKMYDEYFFNMISDELNTRISAQIGSSPASMAEKFMQFLDKEAPDLVRTEVDSYLYERCHRRDDKDFDVLK
        K+  + DRFREFWGD VADKMT KVK TL+KM DEYFFNM  DELNT IS+ +GS  ASM EKF +FLDKEA +  +  VD+YL E CHRRD KD DV K
Subjt:  KVGKMTDRFREFWGDDVADKMTTKVKKTLRKMYDEYFFNMISDELNTRISAQIGSSPASMAEKFMQFLDKEAPDLVRTEVDSYLYERCHRRDDKDFDVLK

Query:  WWRLNSSQFLILSQIARDIFAIPLTANLILET---ETRILDRFRCSFPPKMLEAVICAQHWLQSKPLTVDVGNEIEDIDEIDKEFSKIAMEMNL
        WW+LNSS+FLILS+IA+DIFAIPLT +    T   E R+LDRFR  FP K+LEA+IC Q WLQ KPL  DVG+ IEDID++D+EFSKI  E+ L
Subjt:  WWRLNSSQFLILSQIARDIFAIPLTANLILET---ETRILDRFRCSFPPKMLEAVICAQHWLQSKPLTVDVGNEIEDIDEIDKEFSKIAMEMNL

TrEMBL top hitse value%identityAlignment
A0A0A0LQB5 Uncharacterized protein3.2e-4854.11Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG
        MA + EY I+VGGL+W  SER+LE+AF RFGK+L+ +I  +R  GR RGFGF+TFA+RRGMD+AIREM GQEL + II+VNKA  +M+G+  E G+   G
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG

Query:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-VKDHSDSKHDKDGCYNYH
        Y S GR SF RG  RS   DECFKCG  GHWARDCP V    G  R S+ S S F+ +   D FG DR RYVD++Y+GGR   +D  D + DK G  + +
Subjt:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-VKDHSDSKHDKDGCYNYH

Query:  HNDRVTS
         +DR  S
Subjt:  HNDRVTS

A0A6J1BW89 glycine-rich RNA-binding protein RZ1C-like isoform X12.0e-5055.56Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG
        MA + EY I+VGGL+W  SER+LE+AFSR+GKIL+ +I  +R  GR RGFGF+TFA+RRGMD+AIREM G+EL +  I+VNKA  +M+G+  EPG+   G
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG

Query:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-VKDHSDSKHDKDGCYNYH
        Y S GR SF RG  RS   DECFKCG  GHWARDCP V    GR R S+ S S F+ +   D FG DR RYVD +YDGGR   +DH D + DK G  + +
Subjt:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-VKDHSDSKHDKDGCYNYH

Query:  HNDRVTS
         +DR  S
Subjt:  HNDRVTS

A0A6J1BWP1 zinc finger BED domain-containing protein RICESLEEPER 2-like1.2e-4768.79Show/hide
Query:  MKGEYVEPGYSRGYLSSGRVSFERGARSTVHDECFKCGCLGHWARDCPLVGRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGR-QVKDHS-DSKH
        M+GE + P   RGYLS GR SF RG RS VHD C+ CGCLGHWARDCPL GRRRPS+ S S FER+DS++SFGEDR RYVD+QYDGGR +V+DH  D+K 
Subjt:  MKGEYVEPGYSRGYLSSGRVSFERGARSTVHDECFKCGCLGHWARDCPLVGRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGR-QVKDHS-DSKH

Query:  DKDGCYNYHHNDRVTSIRGTSNAHGSCSHLVDCKVGKMTDR
        DK GCYNYHH+DRV S RGTSNA  SCSHL D +VG +T R
Subjt:  DKDGCYNYHHNDRVTSIRGTSNAHGSCSHLVDCKVGKMTDR

A0A6J1HB93 glycine-rich RNA-binding protein RZ1C-like3.8e-4953.55Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG
        MA + EY I+VGGL+W  SERELE+AFSR+GKI++ +I  +R  GR RGFGF+TFA+RRGMD+AIREM G E  + II+VNKA  +M+G+  EPG+   G
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG

Query:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-----VKDHSDSKHDKDGC
        Y S GR SF RG  RS   DECFKCG  GHWARDCP      GR R S+ S S F+ +   D FG DR RYVD +YDGGR       +D  D + DK G 
Subjt:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-----VKDHSDSKHDKDGC

Query:  YNYHHNDRVTS
         + + +DR  S
Subjt:  YNYHHNDRVTS

A0A6J1JS04 glycine-rich RNA-binding protein RZ1C3.8e-4953.55Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG
        MA + EY I+VGGL+W  SERELE+AFSR+GKI++ +I  +R  GR RGFGF+TFA+RRGMD+AIREM G E  + II+VNKA  +M+G+  EPG+   G
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGY-SRG

Query:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-----VKDHSDSKHDKDGC
        Y S GR SF RG  RS   DECFKCG  GHWARDCP      GR R S+ S S F+ +   D FG DR RYVD +YDGGR       +D  D + DK G 
Subjt:  YLSSGRVSFERGA-RSTVHDECFKCGCLGHWARDCPLV----GRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ-----VKDHSDSKHDKDGC

Query:  YNYHHNDRVTS
         + + +DR  S
Subjt:  YNYHHNDRVTS

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B1.2e-2839.9Show/hide
Query:  EYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEP-GYSRGYLSSG
        E  I+VGGL+W  +ER+LE  F R+GKI + +I   R  GR RGFGF+TF +RRG D+AI+ M G+EL   +I+VNKA  ++ GE V+      GY S G
Subjt:  EYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEP-GYSRGYLSSG

Query:  RVSFERGARSTVHDECFKCGCLGHWARDCPLVG--RRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHHNDRVTS
        +            DECFKC   GHWARDCP  G  R R   P        D D        R ++++ +  R+   + D + D+DG   Y + DR  S
Subjt:  RVSFERGARSTVHDECFKCGCLGHWARDCPLVG--RRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHHNDRVTS

P49311 Glycine-rich RNA-binding protein GRP2A4.6e-2057.14Show/hide
Query:  EYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKG
        EY  +VGGL W T ER LE AFS+FG+++D++I  DR  GRSRGFGFVTF + + M +AI  M+GQ+LD   ITVN+A SR  G
Subjt:  EYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKG

Q03251 Glycine-rich RNA-binding protein 83.5e-2047.27Show/hide
Query:  EKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMK--GEYVEPGYSRGYL
        E EY  +VGGL W T++ +L+  FS+FG ++D++I  DR  GRSRGFGFVTF + + M +AI EM+G+ELD  +ITVN+A SR    G     G   GY 
Subjt:  EKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMK--GEYVEPGYSRGYL

Query:  SSGRVSFERG
        S G   +  G
Subjt:  SSGRVSFERG

Q8RWN5 Glycine-rich RNA-binding protein RZ1C7.6e-3141.95Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGYSR--
        MA ++   I+VGGL+   ++R+LE AFSRFG ILD +I  +R  GRSRGFGF+TFA+RR MD +IREM G++    +I+VN+A  ++  +  E   SR  
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGYSR--

Query:  ---GYLSSGRVSFERGARS---TVHDECFKCGCLGHWARDCPLVG-----------RRRPSY-PSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ--VKD
           GY  +G+ SF  G         DECFKCG +GHWARDCP  G            R  +Y  S    +R    D +  DR RY+D +YDG  +   +D
Subjt:  ---GYLSSGRVSFERGARS---TVHDECFKCGCLGHWARDCPLVG-----------RRRPSY-PSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ--VKD

Query:  HSDSK
          DS+
Subjt:  HSDSK

Q9LIN3 Glycine-rich RNA-binding protein RZ1A1.3e-2537.67Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKG----EYVEPGY
        M+ + EY  ++GGL W TS+R L DAF ++G +++A++  D+F GRSRGFGF+TF  ++ MD AI  M+G +LD   ITV+KA     G       + G 
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKG----EYVEPGY

Query:  SRGY-LSSGRVSFERGARSTVHDECFKCGCLGHWARDCPLVGRRRPSYPSHSLFERNDS-DDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHH
         RGY     R S  RG       +CFKCG  GH+AR+CP    R       S  +R  S DD +G    RY  K+   G +     D    KD  Y+   
Subjt:  SRGY-LSSGRVSFERGARSTVHDECFKCGCLGHWARDCPLVGRRRPSYPSHSLFERNDS-DDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHH

Query:  NDRVTSIRGTSNAHG
        +DR  S  G  + +G
Subjt:  NDRVTSIRGTSNAHG

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain8.6e-3039.9Show/hide
Query:  EYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEP-GYSRGYLSSG
        E  I+VGGL+W  +ER+LE  F R+GKI + +I   R  GR RGFGF+TF +RRG D+AI+ M G+EL   +I+VNKA  ++ GE V+      GY S G
Subjt:  EYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEP-GYSRGYLSSG

Query:  RVSFERGARSTVHDECFKCGCLGHWARDCPLVG--RRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHHNDRVTS
        +            DECFKC   GHWARDCP  G  R R   P        D D        R ++++ +  R+   + D + D+DG   Y + DR  S
Subjt:  RVSFERGARSTVHDECFKCGCLGHWARDCPLVG--RRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHHNDRVTS

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain8.6e-3039.9Show/hide
Query:  EYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEP-GYSRGYLSSG
        E  I+VGGL+W  +ER+LE  F R+GKI + +I   R  GR RGFGF+TF +RRG D+AI+ M G+EL   +I+VNKA  ++ GE V+      GY S G
Subjt:  EYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEP-GYSRGYLSSG

Query:  RVSFERGARSTVHDECFKCGCLGHWARDCPLVG--RRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHHNDRVTS
        +            DECFKC   GHWARDCP  G  R R   P        D D        R ++++ +  R+   + D + D+DG   Y + DR  S
Subjt:  RVSFERGARSTVHDECFKCGCLGHWARDCPLVG--RRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHHNDRVTS

AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain8.9e-2737.67Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKG----EYVEPGY
        M+ + EY  ++GGL W TS+R L DAF ++G +++A++  D+F GRSRGFGF+TF  ++ MD AI  M+G +LD   ITV+KA     G       + G 
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKG----EYVEPGY

Query:  SRGY-LSSGRVSFERGARSTVHDECFKCGCLGHWARDCPLVGRRRPSYPSHSLFERNDS-DDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHH
         RGY     R S  RG       +CFKCG  GH+AR+CP    R       S  +R  S DD +G    RY  K+   G +     D    KD  Y+   
Subjt:  SRGY-LSSGRVSFERGARSTVHDECFKCGCLGHWARDCPLVGRRRPSYPSHSLFERNDS-DDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHH

Query:  NDRVTSIRGTSNAHG
        +DR  S  G  + +G
Subjt:  NDRVTSIRGTSNAHG

AT4G39260.1 cold, circadian rhythm, and RNA binding 12.5e-2147.27Show/hide
Query:  EKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMK--GEYVEPGYSRGYL
        E EY  +VGGL W T++ +L+  FS+FG ++D++I  DR  GRSRGFGFVTF + + M +AI EM+G+ELD  +ITVN+A SR    G     G   GY 
Subjt:  EKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMK--GEYVEPGYSRGYL

Query:  SSGRVSFERG
        S G   +  G
Subjt:  SSGRVSFERG

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain5.4e-3241.95Show/hide
Query:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGYSR--
        MA ++   I+VGGL+   ++R+LE AFSRFG ILD +I  +R  GRSRGFGF+TFA+RR MD +IREM G++    +I+VN+A  ++  +  E   SR  
Subjt:  MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGYSR--

Query:  ---GYLSSGRVSFERGARS---TVHDECFKCGCLGHWARDCPLVG-----------RRRPSY-PSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ--VKD
           GY  +G+ SF  G         DECFKCG +GHWARDCP  G            R  +Y  S    +R    D +  DR RY+D +YDG  +   +D
Subjt:  ---GYLSSGRVSFERGARS---TVHDECFKCGCLGHWARDCPLVG-----------RRRPSY-PSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQ--VKD

Query:  HSDSK
          DS+
Subjt:  HSDSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTACGAAAAAGAGTACGAAATATACGTCGGAGGCTTAACGTGGTGCACATCGGAGCGAGAACTCGAAGACGCCTTCAGCCGCTTTGGAAAAATTCTCGATGCTCG
AATCAGTAGAGATCGATTTTTAGGTCGTTCTCGTGGATTTGGATTTGTTACCTTTGCAAATCGTCGAGGGATGGATAATGCAATCAGGGAAATGGACGGGCAGGAACTTG
ACCAGAGTATTATCACAGTGAACAAGGCTAATTCCAGAATGAAGGGAGAATATGTAGAACCAGGCTATAGCAGAGGGTATTTATCTAGTGGTCGGGTTAGCTTTGAGAGA
GGAGCTAGATCCACGGTGCATGATGAGTGCTTTAAGTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGTTGGTAGGCGTAGACCCTCATATCCATCTCATTC
TTTGTTTGAAAGGAATGACAGTGACGATTCTTTTGGGGAAGACCGTGGTCGATATGTGGATAAGCAGTACGATGGAGGACGACAAGTTAAGGATCATTCTGATAGTAAAC
ATGATAAGGATGGATGCTACAACTATCATCATAACGACAGGGTGACTTCTATAAGAGGAACTTCCAATGCACATGGTTCTTGCTCTCACTTGGTTGACTGCAAGGTTGGA
AAAATGACTGATCGGTTTCGGGAATTTTGGGGGGATGATGTTGCTGATAAGATGACTACGAAAGTGAAAAAGACATTACGAAAAATGTATGATGAGTACTTCTTCAATAT
GATAAGTGATGAACTGAATACTCGCATTAGTGCACAAATTGGTTCTTCTCCTGCATCAATGGCTGAGAAATTTATGCAATTTCTTGATAAAGAAGCTCCAGATTTAGTTA
GGACAGAGGTAGATAGTTATTTATATGAACGTTGTCATCGAAGAGATGATAAAGATTTTGATGTCTTGAAGTGGTGGAGGTTAAACTCTTCTCAATTTTTAATCCTCAGT
CAAATAGCCAGGGACATCTTTGCCATTCCTCTCACTGCAAATTTGATTCTTGAAACTGAAACTCGTATTCTGGATCGTTTTCGGTGCTCATTTCCTCCTAAGATGTTGGA
AGCCGTCATTTGTGCTCAACATTGGCTACAATCTAAACCGCTCACGGTTGATGTTGGTAATGAAATTGAAGATATTGATGAAATAGATAAAGAATTTTCCAAAATTGCCA
TGGAGATGAACTTGGACGCAATTGCATACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTACGAAAAAGAGTACGAAATATACGTCGGAGGCTTAACGTGGTGCACATCGGAGCGAGAACTCGAAGACGCCTTCAGCCGCTTTGGAAAAATTCTCGATGCTCG
AATCAGTAGAGATCGATTTTTAGGTCGTTCTCGTGGATTTGGATTTGTTACCTTTGCAAATCGTCGAGGGATGGATAATGCAATCAGGGAAATGGACGGGCAGGAACTTG
ACCAGAGTATTATCACAGTGAACAAGGCTAATTCCAGAATGAAGGGAGAATATGTAGAACCAGGCTATAGCAGAGGGTATTTATCTAGTGGTCGGGTTAGCTTTGAGAGA
GGAGCTAGATCCACGGTGCATGATGAGTGCTTTAAGTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGTTGGTAGGCGTAGACCCTCATATCCATCTCATTC
TTTGTTTGAAAGGAATGACAGTGACGATTCTTTTGGGGAAGACCGTGGTCGATATGTGGATAAGCAGTACGATGGAGGACGACAAGTTAAGGATCATTCTGATAGTAAAC
ATGATAAGGATGGATGCTACAACTATCATCATAACGACAGGGTGACTTCTATAAGAGGAACTTCCAATGCACATGGTTCTTGCTCTCACTTGGTTGACTGCAAGGTTGGA
AAAATGACTGATCGGTTTCGGGAATTTTGGGGGGATGATGTTGCTGATAAGATGACTACGAAAGTGAAAAAGACATTACGAAAAATGTATGATGAGTACTTCTTCAATAT
GATAAGTGATGAACTGAATACTCGCATTAGTGCACAAATTGGTTCTTCTCCTGCATCAATGGCTGAGAAATTTATGCAATTTCTTGATAAAGAAGCTCCAGATTTAGTTA
GGACAGAGGTAGATAGTTATTTATATGAACGTTGTCATCGAAGAGATGATAAAGATTTTGATGTCTTGAAGTGGTGGAGGTTAAACTCTTCTCAATTTTTAATCCTCAGT
CAAATAGCCAGGGACATCTTTGCCATTCCTCTCACTGCAAATTTGATTCTTGAAACTGAAACTCGTATTCTGGATCGTTTTCGGTGCTCATTTCCTCCTAAGATGTTGGA
AGCCGTCATTTGTGCTCAACATTGGCTACAATCTAAACCGCTCACGGTTGATGTTGGTAATGAAATTGAAGATATTGATGAAATAGATAAAGAATTTTCCAAAATTGCCA
TGGAGATGAACTTGGACGCAATTGCATACTGA
Protein sequenceShow/hide protein sequence
MAYEKEYEIYVGGLTWCTSERELEDAFSRFGKILDARISRDRFLGRSRGFGFVTFANRRGMDNAIREMDGQELDQSIITVNKANSRMKGEYVEPGYSRGYLSSGRVSFER
GARSTVHDECFKCGCLGHWARDCPLVGRRRPSYPSHSLFERNDSDDSFGEDRGRYVDKQYDGGRQVKDHSDSKHDKDGCYNYHHNDRVTSIRGTSNAHGSCSHLVDCKVG
KMTDRFREFWGDDVADKMTTKVKKTLRKMYDEYFFNMISDELNTRISAQIGSSPASMAEKFMQFLDKEAPDLVRTEVDSYLYERCHRRDDKDFDVLKWWRLNSSQFLILS
QIARDIFAIPLTANLILETETRILDRFRCSFPPKMLEAVICAQHWLQSKPLTVDVGNEIEDIDEIDKEFSKIAMEMNLDAIAY