; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016705 (gene) of Snake gourd v1 genome

Gene IDTan0016705
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationLG02:3514536..3516678
RNA-Seq ExpressionTan0016705
SyntenyTan0016705
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589134.1 hypothetical protein SDJN03_17699, partial [Cucurbita argyrosperma subsp. sororia]3.6e-6590.34Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGR+ M TAR QQLTRISECLVGDETGSIVFTARN+QVD++KPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]1.4e-6692.41Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGR+TM TAR QQLTRISECLVGDETGSIVFTARN+QVD+MKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]2.9e-6793.79Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGR+TM TAR QQLTRISECLVGDETGSIVFTARN+QVDIMKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]1.2e-6591.03Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGR+ M TAR QQLTRISECLVGDETGSIVFTARN+QVD+MKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.0e-6794.48Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP VNAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGR+TM TAR QQLTRISECLVGDETGSIVFTARN+QVDIMKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein7.0e-6792.41Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGR+TM TAR QQLTRISECLVGDETGSIVFTARN+QVD+MKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284401.4e-6793.79Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGR+TM TAR QQLTRISECLVGDETGSIVFTARN+QVDIMKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein1.4e-6793.79Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP  NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGR+TM TAR QQLTRISECLVGDETGSIVFTARN+QVDIMKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like1.7e-6591.72Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MAT  VNAPAKRKPVFIKVEELKPGTSGHTL VKVVSSKNVK+VNKGGR+ M TAR QQLTRISECLVGDETGSIVFTARN+QVDIMKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like5.9e-6691.03Show/hide
Query:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI
        MATP VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGR+ M TAR QQLTRISECLVGDETGSIVFTARN+QVD+MKPG T+TLRNAKI
Subjt:  MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284403.2e-4563.38Show/hide
Query:  ATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKID
        A  T  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R   + +R  Q +RI ECL+GDETG I+FTARN+QVD+MKPG T+ LRN++ID
Subjt:  ATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKID

Query:  MFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGR+E    A+F VKEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein6.9e-4366.91Show/hide
Query:  AKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARN+QVD+MK G  +TLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EPANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVEVA EP +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EPANFEVKEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein6.9e-4366.91Show/hide
Query:  AKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARN+QVD+MK G  +TLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EPANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVEVA EP +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EPANFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein2.2e-4468.66Show/hide
Query:  RKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRLAV
        +KP F KV++L+PGTSGH + VK+VS+   K+V + GRA    AR     RISEC+VGDETG IVFTARN+QVD+MK G T+TLRNAKIDM+KGSMRLAV
Subjt:  RKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRLAV

Query:  DKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DKWGRVEV EPA+F+VKED N+SL+EYELVNV E
Subjt:  DKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein1.8e-4670.37Show/hide
Query:  KRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRLA
        K+KPVF+KV++LKPGTSGHTLTVKVV   +V    K G A   ++ H +  RISECLVGDET  I+FTARN+QV++MKPG T+ LRNAKIDMFKGSMRLA
Subjt:  KRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        VDKWGR+E  EPA+  VKEDNNLSLVEYELVNV E
Subjt:  VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein2.3e-4663.38Show/hide
Query:  ATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKID
        A  T  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R   + +R  Q +RI ECL+GDETG I+FTARN+QVD+MKPG T+ LRN++ID
Subjt:  ATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKID

Query:  MFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGR+E    A+F VKEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCAACGGTGAACGCCCCAGCAAAGAGGAAGCCTGTGTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACCAGCGGCCATACTCTCACGGTCAAGGTCGTAAG
CTCCAAAAATGTGAAGGTTGTCAATAAAGGTGGACGAGCCACCATGAATACGGCTCGCCATCAGCAATTAACTCGTATCTCTGAATGTCTGGTTGGTGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAATGAACAAGTTGATATAATGAAGCCTGGAATTACTATGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCA
GTAGATAAATGGGGGCGAGTCGAAGTTGCCGAACCAGCTAACTTTGAAGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAATGTTGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGCCAACGGTGAACGCCCCAGCAAAGAGGAAGCCTGTGTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACCAGCGGCCATACTCTCACGGTCAAGGTCGTAAG
CTCCAAAAATGTGAAGGTTGTCAATAAAGGTGGACGAGCCACCATGAATACGGCTCGCCATCAGCAATTAACTCGTATCTCTGAATGTCTGGTTGGTGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAATGAACAAGTTGATATAATGAAGCCTGGAATTACTATGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCA
GTAGATAAATGGGGGCGAGTCGAAGTTGCCGAACCAGCTAACTTTGAAGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAATGTTGAAGAGTGA
Protein sequenceShow/hide protein sequence
MATPTVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRATMNTARHQQLTRISECLVGDETGSIVFTARNEQVDIMKPGITMTLRNAKIDMFKGSMRLA
VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE