CuGenDBv2

Gene ID	Tan0016723
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Pol protein
Genome location	LG03:50150153..50150542
RNA-Seq Expression	Tan0016723
Synteny	Tan0016723
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035389.1 pol protein [Cucumis melo var. makuwa]

1.4e-52

79.69

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        M+GVLRF ++GKLSPRF+GPFEILERIGPVAYRLALPPSL+ VHDVFHVSMLR YVPD SHV+DYKPL++DENLSY E+PVE+LARE K LRN+EI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLW+N +++EATWEREDEMR+ YPELFE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

KAA0042023.1 pol protein [Cucumis melo var. makuwa]

8.1e-53

79.69

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        MKGVLRF ++GKLSPRF+GPFE LERIGPVAYRLALPPSL+AVHDVFHVSMLR YVPD SHV+DY+PL++DENLSY E+PVE+LARE K+LRNREI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLWQN +++EATWERED+MR  YPE FE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

KAA0050009.1 pol protein [Cucumis melo var. makuwa]

1.4e-52

79.69

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        M+GVLRF +KGKLSPRF+GPFEILERIGPVAYRLALPPSL+ VHDVFHVSMLR YVPD SHV++Y+PL++DENLSY E+PVE+LARE K+LRNREI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLW+N Q++EATWERED+MR+ YPELFE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

KAA0063495.1 pol protein [Cucumis melo var. makuwa]

1.1e-52

78.91

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        M+GVLRF ++GKLSPRF+GPFEILERIGPVAYRLALPPSL+ VHDVFHVSMLR YVPD SHV+DY+PL++DENLSY E+PVE+LARE K+LRN+EI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLWQN +++EATWERED+MR+ YPELFE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

TYK03215.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.8e-52

80.47

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        MKGVLRF K+GKLSPRF+GPFEILERIGPVAYRLALPPSL+ VHDVFHVSMLR YVPD SHV+DY+PL++DENLSY E+PVE+LARE K+LRNREI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLW+N +++EATWERED+MR+ YPELFE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Z1 Pol protein

6.7e-53

79.69

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        M+GVLRF ++GKLSPRF+GPFEILERIGPVAYRLALPPSL+ VHDVFHVSMLR YVPD SHV+DYKPL++DENLSY E+PVE+LARE K LRN+EI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLW+N +++EATWEREDEMR+ YPELFE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

A0A5A7TFN7 Pol protein

3.9e-53

79.69

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        MKGVLRF ++GKLSPRF+GPFE LERIGPVAYRLALPPSL+AVHDVFHVSMLR YVPD SHV+DY+PL++DENLSY E+PVE+LARE K+LRNREI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLWQN +++EATWERED+MR  YPE FE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

A0A5A7TYE6 Ty3-gypsy retrotransposon protein

8.7e-53

80.47

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        MKGVLRF K+GKLSPRF+GPFEILERIGPVAYRLALPPSL+ VHDVFHVSMLR YVPD SHV+DY+PL++DENLSY E+PVE+LARE K+LRNREI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLW+N +++EATWERED+MR+ YPELFE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

A0A5A7U943 Pol protein

6.7e-53

79.69

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        M+GVLRF +KGKLSPRF+GPFEILERIGPVAYRLALPPSL+ VHDVFHVSMLR YVPD SHV++Y+PL++DENLSY E+PVE+LARE K+LRNREI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLW+N Q++EATWERED+MR+ YPELFE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

A0A5A7VC70 Pol protein

5.1e-53

78.91

Show/hide

Query:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK
        M+GVLRF ++GKLSPRF+GPFEILERIGPVAYRLALPPSL+ VHDVFHVSMLR YVPD SHV+DY+PL++DENLSY E+PVE+LARE K+LRN+EI LVK
Subjt:  MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVK

Query:  VLWQNQQLKEATWEREDEMRTNYPELFE
        VLWQN +++EATWERED+MR+ YPELFE
Subjt:  VLWQNQQLKEATWEREDEMRTNYPELFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAAGGTGTGTTGAGATTCGGCAAGAAAGGAAAGTTGAGCCCTAGATTCATTGGACCATTCGAGATCTTGGAGCGTATTGGCCCAGTGGCGTATCGTTTAGCCTTACC
ACCGTCGCTAGCAGCCGTGCACGACGTGTTTCACGTGTCGATGCTGCGAGGCTACGTGCCAGACGCATCCCACGTGATTGACTACAAGCCACTGCAGGTTGATGAGAATC
TAAGCTACAAGGAGAAGCCAGTGGAAATCTTGGCTCGAGAGAAGAAGGTGTTGAGGAACAGAGAAATCGACCTTGTTAAGGTCTTATGGCAAAATCAGCAGCTTAAAGAG
GCTACTTGGGAGCGTGAGGACGAGATGAGAACGAACTATCCGGAGCTGTTTGAGAACTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKGVLRFGKKGKLSPRFIGPFEILERIGPVAYRLALPPSLAAVHDVFHVSMLRGYVPDASHVIDYKPLQVDENLSYKEKPVEILAREKKVLRNREIDLVKVLWQNQQLKE
ATWEREDEMRTNYPELFEN

Tan0016723 (gene) of Snake gourd v1 genome