; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016755 (gene) of Snake gourd v1 genome

Gene IDTan0016755
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationLG01:17950065..17952406
RNA-Seq ExpressionTan0016755
SyntenyTan0016755
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]7.5e-8391.67Show/hide
Query:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS+SCT+SINLTPRSFNSRPP KLGS FLG QS LRW+SP++IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAVDRA NEEIKDFILNFS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

XP_008463435.1 PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]1.4e-8190.48Show/hide
Query:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS+SCTTSINLTPRSFNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFIL FS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]2.0e-8091.67Show/hide
Query:  MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPPLKLGSQFLG QS LRWVSPIAIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]4.1e-8192.26Show/hide
Query:  MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSRPPLKLGSQFLG QS LRWVSPIAIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]1.7e-8291.67Show/hide
Query:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS+SCT S+NLTPRSFNSRPP KL SQFLG QS LRWVSP+AIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTA+DRA NEEIKDFILN SV+ A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein3.6e-8391.67Show/hide
Query:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS+SCT+SINLTPRSFNSRPP KLGS FLG QS LRW+SP++IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAVDRA NEEIKDFILNFS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT6.8e-8290.48Show/hide
Query:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS+SCTTSINLTPRSFNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFIL FS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT6.8e-8290.48Show/hide
Query:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS+SCTTSINLTPRSFNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFIL FS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT9.8e-8191.67Show/hide
Query:  MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPPLKLGSQFLG QS LRWVSPIAIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT2.0e-8192.26Show/hide
Query:  MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSRPPLKLGSQFLG QS LRWVSPIAIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASISCT-TSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT1.6e-4861.71Show/hide
Query:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSP---IAIGPSNGS---RATCWFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MASI CT  ++    S ++    +   +     ++L W+ P    A+ P++ S     TC+F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSP---IAIGPSNGS---RATCWFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRAA ++ ++FIL F+   A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT1.6e-4861.71Show/hide
Query:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSP---IAIGPSNGS---RATCWFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MASI CT  ++    S ++    +   +     ++L W+ P    A+ P++ S     TC+F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSP---IAIGPSNGS---RATCWFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRAA ++ ++FIL F+   A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT9.5e-5766.27Show/hide
Query:  SISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L S+FLG ++    + P  +GPSNGSR TCWF F +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTA+DRA +EEI+D IL +S QKA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein6.8e-5866.27Show/hide
Query:  SISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L S+FLG ++    + P  +GPSNGSR TCWF F +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTA+DRA +EEI+D IL +S QKA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTCCTGCACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCG
ATGGGTCTCGCCCATCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCGGGTATTTATGGCAGCCAGTCCCGAG
ATGACTTCAATAGAGACGATGTTGAGCAGTACTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACGTATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCATCCA
GTGGACATTTTGCTGATGCTGGCTGCATCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGC
CGTGGATAGGGCAGCTAATGAAGAAATCAAGGATTTTATTCTTAACTTTTCTGTTCAAAAGGCATAA
mRNA sequenceShow/hide mRNA sequence
CCTCTGTAAAACAGTTACCCACAATCCCTTCGTCCTCATTGGCCCACCAAATTCTGAGTGATGGATAGAATCTGCAAGAGTGCGAACAAAGCACATTTCCTCTTACAGAA
CTTGCACAAACTCAGCCATCCATGGCTTCCATCTCCTGCACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAGTTTCT
TGGTTTTCAATCGAAGCTCCGATGGGTCTCGCCCATCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCGGGTA
TTTATGGCAGCCAGTCCCGAGATGACTTCAATAGAGACGATGTTGAGCAGTACTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACGTATGACAAAATGGAAGCTCTT
TTGAGCCAAGACATTCATCCAGTGGACATTTTGCTGATGCTGGCTGCATCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAA
AGATGTAGATGGTCGAACTGCCGTGGATAGGGCAGCTAATGAAGAAATCAAGGATTTTATTCTTAACTTTTCTGTTCAAAAGGCATAACTCGGTTTCTCTTTCTTATTTT
TTGTTATTGTGTGGCTCTGTTTTGTTAGGTTTAGAAAGAGGTTTAAGACTTGTATTCCACTGCCTTCTTATGTATATCATAATATTGTATTTGAACGGTACTTTTTTCCT
CCATTAGTAGGGAATCACTTTGAGATCTAAAGAGTTGTATGGGGCGCTGAGTAAGTTATAATTACATGGGGT
Protein sequenceShow/hide protein sequence
MASISCTTSINLTPRSFNSRPPLKLGSQFLGFQSKLRWVSPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHP
VDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAVDRAANEEIKDFILNFSVQKA