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Tan0016759 (gene) of Snake gourd v1 genome

Gene IDTan0016759
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:592159..592470
RNA-Seq ExpressionTan0016759
SyntenyTan0016759
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045363.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-1346Show/hide
Query:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ
        +R +   QP  ES+AS+ R+  C++C + HWGQCL     C+ C Q GHFK++CPQL      +Q   SQTV +Q    V   E TS A+QKG VGRP+Q
Subjt:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ

KAA0053222.1 hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]1.7e-1346Show/hide
Query:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ
        +R +   QP  ESV+S+ R+  C++C + HW QC    +VC+ CGQ GHFK++CPQL      +Q   SQTV +Q    V   E TS A+QKG VGRP+Q
Subjt:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ

KAA0061889.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.9e-1347Show/hide
Query:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ
        +R +   QP  ES+AS+ R+  C++C + H GQCL    VC+ CGQ GHFK++CPQL      +Q   SQTV +Q    V   E TS A+QKG VGRP+Q
Subjt:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ

WP_217833293.1 CCHC-type zinc finger protein, partial [Synechococcus sp. PCC 7002]2.3e-1858.06Show/hide
Query:  SCTGQPIESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGR
        S +G+P ES ASST+KPLC T  KYHWG+C    N C+NCGQ GHFKRECPQLMQE   EQ+TTS  + Q Q       E TS  +QKG  GR
Subjt:  SCTGQPIESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGR

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]7.7e-1452.63Show/hide
Query:  SCTGQPIESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQ
        S +G   ESVAS+ RKPLC  C K H G C    NVCF C Q GHF+R+ PQL      EQR  +Q VNQ + T    GE +S AKQKG  GRPQ
Subjt:  SCTGQPIESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQ

TrEMBL top hitse value%identityAlignment
A0A5A7TP97 Reverse transcriptase8.3e-1446Show/hide
Query:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ
        +R +   QP  ES+AS+ R+  C++C + HWGQCL     C+ C Q GHFK++CPQL      +Q   SQTV +Q    V   E TS A+QKG VGRP+Q
Subjt:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ

A0A5A7UBV9 Uncharacterized protein8.3e-1446Show/hide
Query:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ
        +R +   QP  ESV+S+ R+  C++C + HW QC    +VC+ CGQ GHFK++CPQL      +Q   SQTV +Q    V   E TS A+QKG VGRP+Q
Subjt:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ

A0A5A7UZA9 Retrotransposon protein2.4e-1347Show/hide
Query:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ
        +R +   QP  ES+AS+ R+  C++C + H GQCL    VC+ CGQ GHFK++CPQL      +Q   SQTV +Q    V   E TS A+QKG VGRP+Q
Subjt:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ

A0A5A7V873 DNA/RNA polymerases superfamily protein1.4e-1347Show/hide
Query:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ
        +R +   QP  ES+AS+ R+  C++C + H GQCL    VC+ CGQ GHFK++CPQL      +Q   SQTV +Q    V   E TS A+QKG VGRP+Q
Subjt:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ

A0A5A7VQD2 Putative Gag-pol protein2.4e-1346Show/hide
Query:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ
        +R +   QP  ES+AS+ R+  C++C + H GQCL    VC+ CGQ GHFK++CPQL      +Q   SQT+ +Q    V   E TS A+QKG VGRP+Q
Subjt:  VRDSCTGQP-IESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGATCAGTAAGGGACTCCTGTACAGGGCAACCCATTGAGTCAGTAGCTAGTTCAACAAGGAAACCTTTGTGCAGTACTTGTAGAAAGTATCATTGGGGTCAATG
TTTGAGTGCCGAAAATGTATGTTTCAACTGTGGGCAAGGCGGTCACTTCAAAAGGGAATGCCCCCAGCTAATGCAAGAAGGCATGGTAGAACAGAGAACCACGTCGCAGA
CCGTGAACCAGCAACAAAATACTGGGGTAGCTGGAGGAGAAGCCACTAGTAGTGCTAAGCAGAAGGGACAGGTAGGTCGACCCCAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGGATCAGTAAGGGACTCCTGTACAGGGCAACCCATTGAGTCAGTAGCTAGTTCAACAAGGAAACCTTTGTGCAGTACTTGTAGAAAGTATCATTGGGGTCAATG
TTTGAGTGCCGAAAATGTATGTTTCAACTGTGGGCAAGGCGGTCACTTCAAAAGGGAATGCCCCCAGCTAATGCAAGAAGGCATGGTAGAACAGAGAACCACGTCGCAGA
CCGTGAACCAGCAACAAAATACTGGGGTAGCTGGAGGAGAAGCCACTAGTAGTGCTAAGCAGAAGGGACAGGTAGGTCGACCCCAACAATAG
Protein sequenceShow/hide protein sequence
MMGSVRDSCTGQPIESVASSTRKPLCSTCRKYHWGQCLSAENVCFNCGQGGHFKRECPQLMQEGMVEQRTTSQTVNQQQNTGVAGGEATSSAKQKGQVGRPQQ