; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016764 (gene) of Snake gourd v1 genome

Gene IDTan0016764
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L28
Genome locationLG10:5308985..5310015
RNA-Seq ExpressionTan0016764
SyntenyTan0016764
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018806.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-6388.51Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S +LG +PV +SGV+AASS+KLHFR+KAN ELGFL+SQLSGIKISS+HSLIS +PISAPLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022145908.1 50S ribosomal protein L28, chloroplastic [Momordica charantia]4.0e-6490.54Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAASV+LGLSP NTSGV+AASST+LHFRTK NSELGFLTSQL GIKISS++S I   PISAPLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022924246.1 50S ribosomal protein L28, chloroplastic [Cucurbita moschata]2.0e-6388.51Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S +LG +PV +SGV+AASS+KLHFR+KAN ELGFL+SQLSGIKISS+HSLIS +PISAPLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]1.1e-6489.19Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S +LG +PV++SGV+AASS+KLHFRTK N ELGFL+SQLSGIKISS+HSLISP+PISAPLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]6.8e-6489.19Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAA V+LG +P  +SGV+AASSTKL F TK NSELGFLTSQL+GIKISS+HSLISP+PISAPLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A1S3AWK5 50S ribosomal protein L28, chloroplastic4.0e-6288Show/hide
Query:  MAASVILGLSPVNTS-GVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS-APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASV+ G +P  TS GV+A SSTKLHFRTK NS+LGFL SQLSGIKISS+HSLISP+PIS APLRP+LQPIARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVILGLSPVNTS-GVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS-APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L284.0e-6288Show/hide
Query:  MAASVILGLSPVNTS-GVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS-APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASV+ G +P  TS GV+A SSTKLHFRTK NS+LGFL SQLSGIKISS+HSLISP+PIS APLRP+LQPIARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVILGLSPVNTS-GVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS-APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1CX73 50S ribosomal protein L28, chloroplastic1.9e-6490.54Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAASV+LGLSP NTSGV+AASST+LHFRTK NSELGFLTSQL GIKISS++S I   PISAPLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic9.6e-6488.51Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S +LG +PV +SGV+AASS+KLHFR+KAN ELGFL+SQLSGIKISS+HSLIS +PISAPLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic5.1e-6589.19Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S +LG +PV++SGV+AASS+KLHFRTK N ELGFL+SQLSGIKISS+HSLISP+PISAPLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L284.8e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic5.9e-4271.21Show/hide
Query:  IAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPI-ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRY
        + +S+  +   T  + ELGFLTSQLSG++IS + S +    IS P  P +QPI ARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKR+
Subjt:  IAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPI-ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRY

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic7.9e-4775.21Show/hide
Query:  RTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK
        ++K +SEL F+TSQLSG+KISS+H + S  P+S P +P+LQP+ARR+CPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKRYVKLRLSTKA+K
Subjt:  RTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALK

Query:  TIEKNGLDAVAKKAGIDLRKE
        TIEKNGLDAVAKKAGIDL K+
Subjt:  TIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic2.5e-4572Show/hide
Query:  MAASVILGLSPVNTSGVIAASSTKLHFRTKAN-SELGFLTSQLSGIKISSSHSL-ISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAAS +L  +P N        S  L  + KA  SELGFLTSQLSGI+IS S    I   PISAPL+P+LQP+ARR+CPFTGKK+NK N VS SNHKTK+L
Subjt:  MAASVILGLSPVNTSGVIAASSTKLHFRTKAN-SELGFLTSQLSGIKISSSHSL-ISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYK+VWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L282.8e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family4.2e-4371.21Show/hide
Query:  IAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPI-ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRY
        + +S+  +   T  + ELGFLTSQLSG++IS + S +    IS P  P +QPI ARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKR+
Subjt:  IAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPI-ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRY

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCCGTAATCTTAGGCTTGTCGCCGGTAAATACTTCCGGCGTCATAGCAGCGTCGTCAACGAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTT
TCTCACTTCCCAATTGAGTGGCATCAAAATCTCCTCCAGTCACTCCCTCATCTCGCCCACTCCCATTTCCGCTCCTCTCAGACCTGCGCTTCAACCCATTGCTCGTAGAG
TTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAATTTGGTTTCTTTCTCCAATCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAAGTTTGGTGG
GAAGCTGGGAAGCGTTATGTCAAACTGCGTTTGTCAACAAAGGCATTGAAGACCATTGAGAAAAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAA
GGAGTGA
mRNA sequenceShow/hide mRNA sequence
AACAAAACCATAGGCTTCCAAAGTGACAAGATAACGATAACTGAGAACTCTGCTCACTAACAATGGCAGCTTCCGTAATCTTAGGCTTGTCGCCGGTAAATACTTCCGGC
GTCATAGCAGCGTCGTCAACGAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCCCAATTGAGTGGCATCAAAATCTCCTCCAGTCACTCCCT
CATCTCGCCCACTCCCATTTCCGCTCCTCTCAGACCTGCGCTTCAACCCATTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAATTTGGTTTCTT
TCTCCAATCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAAGTTTGGTGGGAAGCTGGGAAGCGTTATGTCAAACTGCGTTTGTCAACAAAGGCATTG
AAGACCATTGAGAAAAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGATATGACATATGGTAATTCATGACTTTTAATTTTACTCTTAG
AATTTGAAGAAGATTTGTCTGATTACAAAATCATGTTGTATCCTGCTGTTTTTGGGTTAGTAATGTGTTTATTTTTAATGATCACAATGTTCTTGTGTCTTTGCTTTCCC
CCATTTGGCAATGAAGCTGAAATCCATCCCTTGTTCTTTC
Protein sequenceShow/hide protein sequence
MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWW
EAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE