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Tan0016811 (gene) of Snake gourd v1 genome

Gene IDTan0016811
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG04:10648174..10651967
RNA-Seq ExpressionTan0016811
SyntenyTan0016811
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU27246.1 hypothetical protein TSUD_125260 [Trifolium subterraneum]3.9e-0635.35Show/hide
Query:  SGTTE--IQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIHI
        SGTTE  + RW+  A   +K NVDVA  P++  T  G+ FRD  G  +A  ++     + P   EA TLL  ++      +  +  ESD + L++VIH+
Subjt:  SGTTE--IQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIHI

XP_022841874.1 uncharacterized protein LOC111365549 [Olea europaea var. sylvestris]1.9e-0835.14Show/hide
Query:  KRPTAGSGTT---------EIQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVE
        K+P A SG T         +  RW +   + +KLN D A    ++    G++  D  G +I AAS P N  L+P  +EA  L++GL++   L + HL VE
Subjt:  KRPTAGSGTT---------EIQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVE

Query:  SDCEQLVKVIH
        SDC  LV  ++
Subjt:  SDCEQLVKVIH

XP_022848821.1 AP-4 complex subunit mu-like [Olea europaea var. sylvestris]2.1e-0737.08Show/hide
Query:  RWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIH
        RW +  +  +KLN+D A +  ++ +  G++ RD  G  I  AS P+N  L+P  +EA  L++GL++   L + HL VESDC  LV  ++
Subjt:  RWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIH

XP_035551721.1 uncharacterized protein LOC118349890 [Juglans regia]5.1e-0634.83Show/hide
Query:  RWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIH
        RW +  +D++KLN+D A     +    G V R+  G ++ A S   +  L+P  VEA  LL+GL++   L +  L +ESDC  LV+ ++
Subjt:  RWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIH

XP_040379850.1 uncharacterized protein LOC121054416 [Oryza brachyantha]1.3e-0631.96Show/hide
Query:  IQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIHIIKLHK
        I++W+   Q  +K N+D +   TN+T   GM+ RD  G  I   ++     L+P +VEAT  + G++M        L +ESDC +LV + H+ ++ +
Subjt:  IQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIHIIKLHK

TrEMBL top hitse value%identityAlignment
A0A125QUI2 RNase H domain-containing protein9.4e-0630Show/hide
Query:  QRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIH
        +RW     DT+KLN + A      +  +G++ RD  G ++       N   +PF VE    LQG+++   + +GH+ VE+D +++VK ++
Subjt:  QRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIH

A0A2I4DVZ3 uncharacterized protein LOC1089839719.4e-0631.48Show/hide
Query:  EIQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIHIIKLHKLN
        +I RWK  +   +KLNVD A     +    G+V RD  G ++ AA++  +    P ++E   +L+GL++ + L + +L VE+DC  LV+ +         
Subjt:  EIQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIHIIKLHKLN

Query:  KKGTRRSF
         +GT+ SF
Subjt:  KKGTRRSF

A0A2Z6M5F7 Uncharacterized protein1.9e-0635.35Show/hide
Query:  SGTTE--IQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIHI
        SGTTE  + RW+  A   +K NVDVA  P++  T  G+ FRD  G  +A  ++     + P   EA TLL  ++      +  +  ESD + L++VIH+
Subjt:  SGTTE--IQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIHI

A0A6P9EWW1 uncharacterized protein LOC1183498902.5e-0634.83Show/hide
Query:  RWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIH
        RW +  +D++KLN+D A     +    G V R+  G ++ A S   +  L+P  VEA  LL+GL++   L +  L +ESDC  LV+ ++
Subjt:  RWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKVIH

A0A803NS38 Uncharacterized protein4.2e-0639.29Show/hide
Query:  WKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLV
        W +     +K+NVD A   T++    G + RD CG++ AA S+P    L P  +EA TL  GL+  + L V   +VESDC  LV
Subjt:  WKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTCACCAGGCAGCTAGAGAAGACAAACGCCCTACCGCCGGCTCAGGGACTACGGAAATACAAAGGTGGAAGTCTCATGCGCAAGATACCATCAAACTAAATGT
GGATGTTGCATGTCATCCTACAAATTCGACTACCGACTTTGGTATGGTCTTCCGCGACTGGTGCGGAAACCTCATAGCAGCTGCATCAGAACCCTCCAACTGCAAGCTTG
ATCCATTCTCTGTCGAAGCTACAACTCTCCTTCAGGGCTTGAAGATGGTCGAACAACTAGCGGTAGGTCACCTTTGGGTTGAATCGGATTGTGAGCAGCTGGTAAAGGTC
ATCCATATAATAAAATTACATAAACTAAACAAAAAAGGCACTCGTAGATCTTTCTTCAAATTTCCTCGACCCTCAGAGAGCGGGCTGAGCGGCGACAACAAAAATGAACG
GTCGGCTGGGCAGTGGCAAGAAGAGGAACGGTCAGCGAACACGATCGACGGCGGCAGTGGAAGGCTGGCGACGGTCGGCTGGCGGCGAGGCAAGGAAGGAGGGGTCGACG
GCGGCGCAATGAAGAAGAAGAAAGGTTTAGGCGTCGAGGGTTTCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTCACCAGGCAGCTAGAGAAGACAAACGCCCTACCGCCGGCTCAGGGACTACGGAAATACAAAGGTGGAAGTCTCATGCGCAAGATACCATCAAACTAAATGT
GGATGTTGCATGTCATCCTACAAATTCGACTACCGACTTTGGTATGGTCTTCCGCGACTGGTGCGGAAACCTCATAGCAGCTGCATCAGAACCCTCCAACTGCAAGCTTG
ATCCATTCTCTGTCGAAGCTACAACTCTCCTTCAGGGCTTGAAGATGGTCGAACAACTAGCGGTAGGTCACCTTTGGGTTGAATCGGATTGTGAGCAGCTGGTAAAGGTC
ATCCATATAATAAAATTACATAAACTAAACAAAAAAGGCACTCGTAGATCTTTCTTCAAATTTCCTCGACCCTCAGAGAGCGGGCTGAGCGGCGACAACAAAAATGAACG
GTCGGCTGGGCAGTGGCAAGAAGAGGAACGGTCAGCGAACACGATCGACGGCGGCAGTGGAAGGCTGGCGACGGTCGGCTGGCGGCGAGGCAAGGAAGGAGGGGTCGACG
GCGGCGCAATGAAGAAGAAGAAAGGTTTAGGCGTCGAGGGTTTCAAATGA
Protein sequenceShow/hide protein sequence
MEVHQAAREDKRPTAGSGTTEIQRWKSHAQDTIKLNVDVACHPTNSTTDFGMVFRDWCGNLIAAASEPSNCKLDPFSVEATTLLQGLKMVEQLAVGHLWVESDCEQLVKV
IHIIKLHKLNKKGTRRSFFKFPRPSESGLSGDNKNERSAGQWQEEERSANTIDGGSGRLATVGWRRGKEGGVDGGAMKKKKGLGVEGFK