; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0016863 (gene) of Snake gourd v1 genome

Gene IDTan0016863
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG07:48337458..48337874
RNA-Seq ExpressionTan0016863
SyntenyTan0016863
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026128.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-4682.73Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL
        MYSK YTKRIDNLRMP GYQPPK QQFDGKGN K+H+AHFVETCEN G+RGD LV+QFVR+LK NAF+WR VSMMELTN KQRKGEPVIDYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL

Query:  DQKDRLTRVS
        D KD+LT +S
Subjt:  DQKDRLTRVS

KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-4681.65Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL
        MYSKPYTKRI+NLRMP GYQP K Q+FDGKGNPK+H+AHFVETCENAG+RGD LV+QFVR+LK NAF+WR VSMMELTN KQRKGEPVIDYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL

Query:  DQKDRLTRV
        D K++LT +
Subjt:  DQKDRLTRV

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-4884.55Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL
        MYSKPYTKRIDNLR+P GYQPPK QQFDGKGNPKKH+AHFVETCENAG+RGD LV+QFVR LK NAF+W  VSMMELTN KQRKGEPVIDYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL

Query:  DQKDRLTRVS
        D KD+LT +S
Subjt:  DQKDRLTRVS

TYK15513.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-4884.55Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL
        MYSKPYTKRIDNLR+P GYQPPK QQFDGKGNPKKH+AHFVETCENAG+RGD LV+QFVR LK NAF+W  VSMMELTN KQRKGEPVIDYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL

Query:  DQKDRLTRVS
        D KD+LT +S
Subjt:  DQKDRLTRVS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.1e-4570.8Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDW---------------------------RTVS
        MYSKPYTKRIDNLRMP GYQPPK QQFDGKGNPK+HVAHFVETCENAG+RGD LV+QFVR+LK NAF+W                           RTVS
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDW---------------------------RTVS

Query:  MMELTNAKQRKGEPVIDYINRWRALSLDQKDRLTRVS
        MMELTN KQRKGEPVIDYINRWRALSLD KDRLT +S
Subjt:  MMELTNAKQRKGEPVIDYINRWRALSLDQKDRLTRVS

TrEMBL top hitse value%identityAlignment
A0A5A7TJH2 Retrotransposon gag protein1.8e-4681.65Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL
        MYSKPYTKRI+NLRMP GYQP K Q+FDGKGNPK+H+AHFVETCENAG+RGD LV+QFVR+LK NAF+WR VSMMELTN KQRKGEPVIDYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL

Query:  DQKDRLTRV
        D K++LT +
Subjt:  DQKDRLTRV

A0A5A7VDY3 Ty3-gypsy retrotransposon protein1.5e-4884.55Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL
        MYSKPYTKRIDNLR+P GYQPPK QQFDGKGNPKKH+AHFVETCENAG+RGD LV+QFVR LK NAF+W  VSMMELTN KQRKGEPVIDYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL

Query:  DQKDRLTRVS
        D KD+LT +S
Subjt:  DQKDRLTRVS

A0A5D3CK73 Ty3-gypsy retrotransposon protein1.4e-4682.73Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL
        MYSK YTKRIDNLRMP GYQPPK QQFDGKGN K+H+AHFVETCEN G+RGD LV+QFVR+LK NAF+WR VSMMELTN KQRKGEPVIDYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL

Query:  DQKDRLTRVS
        D KD+LT +S
Subjt:  DQKDRLTRVS

A0A5D3CUF5 Ty3-gypsy retrotransposon protein1.5e-4884.55Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL
        MYSKPYTKRIDNLR+P GYQPPK QQFDGKGNPKKH+AHFVETCENAG+RGD LV+QFVR LK NAF+W  VSMMELTN KQRKGEPVIDYINRWRALSL
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSL

Query:  DQKDRLTRVS
        D KD+LT +S
Subjt:  DQKDRLTRVS

A0A5D3E0F3 Ty3-gypsy retrotransposon protein5.7e-4569.34Show/hide
Query:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDW---------------------------RTVS
        +YSKPYTKRIDNLRMP GYQPPK+QQFDGKGNPK+HVAHF+ETCE AGTRGDLLVKQFVRTLK NAFDW                           R VS
Subjt:  MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDW---------------------------RTVS

Query:  MMELTNAKQRKGEPVIDYINRWRALSLDQKDRLTRVS
        MMELTN +Q+KGE VIDYINRWRALSLD KDRLT +S
Subjt:  MMELTNAKQRKGEPVIDYINRWRALSLDQKDRLTRVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCCAAACCGTACACTAAGAGGATTGACAATTTGAGGATGCCTACAGGGTACCAACCTCCAAAATTGCAGCAGTTTGACGGGAAGGGCAACCCAAAAAAACACGT
TGCACATTTCGTTGAAACCTGCGAAAATGCAGGGACACGAGGTGACCTCCTGGTGAAACAATTTGTGCGTACCTTGAAGGTTAATGCTTTTGACTGGCGAACCGTGAGTA
TGATGGAACTCACTAATGCCAAACAACGCAAAGGTGAACCTGTCATCGATTACATCAACCGTTGGAGAGCTCTAAGTCTTGATCAGAAGGACCGACTCACGAGGGTTTCT
TTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTCCAAACCGTACACTAAGAGGATTGACAATTTGAGGATGCCTACAGGGTACCAACCTCCAAAATTGCAGCAGTTTGACGGGAAGGGCAACCCAAAAAAACACGT
TGCACATTTCGTTGAAACCTGCGAAAATGCAGGGACACGAGGTGACCTCCTGGTGAAACAATTTGTGCGTACCTTGAAGGTTAATGCTTTTGACTGGCGAACCGTGAGTA
TGATGGAACTCACTAATGCCAAACAACGCAAAGGTGAACCTGTCATCGATTACATCAACCGTTGGAGAGCTCTAAGTCTTGATCAGAAGGACCGACTCACGAGGGTTTCT
TTGTGA
Protein sequenceShow/hide protein sequence
MYSKPYTKRIDNLRMPTGYQPPKLQQFDGKGNPKKHVAHFVETCENAGTRGDLLVKQFVRTLKVNAFDWRTVSMMELTNAKQRKGEPVIDYINRWRALSLDQKDRLTRVS
L