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Tan0016869 (gene) of Snake gourd v1 genome

Gene IDTan0016869
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG06:47012283..47015527
RNA-Seq ExpressionTan0016869
SyntenyTan0016869
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032923.1 polyprotein [Cucumis melo var. makuwa]9.5e-2740.12Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV IQ S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.6e-2639.53Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIF V +Q S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +L  ++N V          +   +SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]1.2e-2639.53Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV +Q S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.2e-2639.53Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV +Q S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +    SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

TYK28077.1 polyprotein [Cucumis melo var. makuwa]9.5e-2740.12Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV IQ S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein4.6e-2740.12Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV IQ S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

A0A5A7U3G5 Polyprotein6.0e-2739.53Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV +Q S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

A0A5A7UVN1 Retrotransposable element Tf27.8e-2739.53Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV +Q S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +    SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

A0A5A7V6D1 Retrotransposable element Tf26.0e-2739.53Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV +Q S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +    SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

A0A5D3DW87 Polyprotein4.6e-2740.12Show/hide
Query:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF
        LSEEIFPV IQ S+H F Q+I+ +    T RF LYFQ  WIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++  F
Subjt:  LSEEIFPVPIQESFHYFSQTIHKNVFLFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEF

Query:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP
        L +K+ +++ LA  +T+ +   ++N V          +   +SP +    +D +Y      DIN PFLD+QP
Subjt:  LNSKSKLLAALAQTTTEADLQKILNQVT--------SIASSSSPQNSEVEEDDEY------DINYPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCACCGATCAATACGCAATGGATCTAGGTTTCACTCAAGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAGTGGAGTCATTAACTCCCCC
ACCGAGGTCATCAACCTCTCTCATACGGCCTACTGCCGTTACACCAATGAAACCTTCTGTCTCACCCACTACTCCGTCTTCATCTCAACAGGGATCTTCAATCCCTACAA
CCTTTGTTGAAGCCGTCAATCCTCCCAAAAGCCTATCAGAAGAAATCTTCCCAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGTATTC
CTATTCACAATGCGTTTTTGTTTATACTTTCAAACCTCTTGGATATTCTGTTGGAATTTCCAAATCAATACATACACCTTTTACAAGCAAATCGTAAAAGTTTTACAAAT
CAAATGGTGGGACAAATACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGT
TCCTCAATTCAAAATCAAAGTTGTTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAGAAAATTTTAAATCAAGTTACTTCAATAGCATCTTCATCTTCTCCA
CAAAACTCTGAAGTAGAAGAAGATGATGAATATGATATCAATTATCCATTTCTAGATTCGCAACCAATTATTAAGCTTGATCGAAGTAACTATCTGCTGTGGAAAAATAT
GGCAATTCACAATGTTTTGGCGAATATTGTAAGTGGCAAAGCTGGAAACCAGCTTGTGCAGAAGCAATCCAACTCTTCCTCTAATTTCAATCGCAACTCACAACAATTTG
GTCGACAGAGAGGTCGTGGACGTGGAAGAGGAAGATGGAATAATAATAATAACAGACTTATTTGCCAAGTGGGTGGAAAAACGGGCCACTCATCTATCGCTTGTTATACA
GGTTTGATAAACAATTTGAAAACCATAATAAAAACAAAGGCCAAAATAATTACTCCTATGGGTTTGGATCGATGGGTCAAGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCACCGATCAATACGCAATGGATCTAGGTTTCACTCAAGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAGTGGAGTCATTAACTCCCCC
ACCGAGGTCATCAACCTCTCTCATACGGCCTACTGCCGTTACACCAATGAAACCTTCTGTCTCACCCACTACTCCGTCTTCATCTCAACAGGGATCTTCAATCCCTACAA
CCTTTGTTGAAGCCGTCAATCCTCCCAAAAGCCTATCAGAAGAAATCTTCCCAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGTATTC
CTATTCACAATGCGTTTTTGTTTATACTTTCAAACCTCTTGGATATTCTGTTGGAATTTCCAAATCAATACATACACCTTTTACAAGCAAATCGTAAAAGTTTTACAAAT
CAAATGGTGGGACAAATACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGT
TCCTCAATTCAAAATCAAAGTTGTTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAGAAAATTTTAAATCAAGTTACTTCAATAGCATCTTCATCTTCTCCA
CAAAACTCTGAAGTAGAAGAAGATGATGAATATGATATCAATTATCCATTTCTAGATTCGCAACCAATTATTAAGCTTGATCGAAGTAACTATCTGCTGTGGAAAAATAT
GGCAATTCACAATGTTTTGGCGAATATTGTAAGTGGCAAAGCTGGAAACCAGCTTGTGCAGAAGCAATCCAACTCTTCCTCTAATTTCAATCGCAACTCACAACAATTTG
GTCGACAGAGAGGTCGTGGACGTGGAAGAGGAAGATGGAATAATAATAATAACAGACTTATTTGCCAAGTGGGTGGAAAAACGGGCCACTCATCTATCGCTTGTTATACA
GGTTTGATAAACAATTTGAAAACCATAATAAAAACAAAGGCCAAAATAATTACTCCTATGGGTTTGGATCGATGGGTCAAGTTGTGA
Protein sequenceShow/hide protein sequence
MSTDQYAMDLGFTQVNRPRTRSASIQIRDSVESLTPPPRSSTSLIRPTAVTPMKPSVSPTTPSSSQQGSSIPTTFVEAVNPPKSLSEEIFPVPIQESFHYFSQTIHKNVF
LFTMRFCLYFQTSWIFCWNFQINTYTFYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSP
QNSEVEEDDEYDINYPFLDSQPIIKLDRSNYLLWKNMAIHNVLANIVSGKAGNQLVQKQSNSSSNFNRNSQQFGRQRGRGRGRGRWNNNNNRLICQVGGKTGHSSIACYT
GLINNLKTIIKTKAKIITPMGLDRWVKL