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Tan0016963 (gene) of Snake gourd v1 genome

Gene IDTan0016963
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG10:27874411..27912212
RNA-Seq ExpressionTan0016963
SyntenyTan0016963
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.4e-1449.53Show/hide
Query:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM
        RS+G+   +DQ   AIA  I+K +  S K  +V+K+NPL++ +     +S + ++ DVMSVM+ADV  +  MAEMERKI+LLMK ++E D EIA LK QM
Subjt:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM

Query:  QNRETAD
        Q RETA+
Subjt:  QNRETAD

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.4e-1449.53Show/hide
Query:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM
        RS+G+   +DQ   AIA  I+K +  S K  +V+K+NPL++ +     +S + ++ DVMSVM+ADV  +  MAEMERKI+LLMK ++E D EIA LK QM
Subjt:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM

Query:  QNRETAD
        Q RETA+
Subjt:  QNRETAD

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.4e-1449.53Show/hide
Query:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM
        RS+G+   +DQ   AIA  I+K +  S K  +V+K+NPL++ +     +S + ++ DVMSVM+ADV  +  MAEMERKI+LLMK ++E D EIA LK QM
Subjt:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM

Query:  QNRETAD
        Q RETA+
Subjt:  QNRETAD

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.4e-1449.53Show/hide
Query:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM
        RS+G+   +DQ   AIA  I+K +  S K  +V+K+NPL++ +     +S + ++ DVMSVM+ADV  +  MAEMERKI+LLMK ++E D EIA LK QM
Subjt:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM

Query:  QNRETAD
        Q RETA+
Subjt:  QNRETAD

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.4e-1449.53Show/hide
Query:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM
        RS+G+   +DQ   AIA  I+K +  S K  +V+K+NPL++ +     +S + ++ DVMSVM+ADV  +  MAEMERKI+LLMK ++E D EIA LK QM
Subjt:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM

Query:  QNRETAD
        Q RETA+
Subjt:  QNRETAD

TrEMBL top hitse value%identityAlignment
A0A5A7UB76 Ty3-gypsy retrotransposon protein1.3e-1343.52Show/hide
Query:  IRSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQ
        IRS+G+  K+DQ  + +A  I+K +  S K  +V+K+NPL+D       +SK+ ++ DVMS+M+AD+  +  M E+ERK++ LMK +EE D EI  L+ Q
Subjt:  IRSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQ

Query:  MQNRETAD
        M+ RETA+
Subjt:  MQNRETAD

A0A5D3BPV7 Ty3-gypsy retrotransposon protein1.3e-1343.52Show/hide
Query:  IRSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQ
        IRS+G+  K+DQ  + +A  I+K +  S K  +V+K+NPL+D       +SK+ ++ DVMS+M+AD+  +  M E+ERK++ LMK +EE D EI  L+ Q
Subjt:  IRSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQ

Query:  MQNRETAD
        M+ RETA+
Subjt:  MQNRETAD

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class1.3e-1341.23Show/hide
Query:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQS-KEASNQDVMSVMIADVE-SDERMAEMERKISLLMKAIEENDLEIAYLKN
        RSR ++  ED  P  +A  I + I    KD +++K+NP  D    +  +S +EA   ++MSVM+ DV+ S++RMAE+E+K+++LMKA+EE D EIA LKN
Subjt:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQS-KEASNQDVMSVMIADVE-SDERMAEMERKISLLMKAIEENDLEIAYLKN

Query:  QMQNRETADGQIRR
         +++R+ A+    R
Subjt:  QMQNRETADGQIRR

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.0e-1446.73Show/hide
Query:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM
        RS+G+  ++DQ  + +A  I+K +  S K  +V+K+NPL+D       +SK+ ++ DVMSVM+AD+  +  MAEMERKI+ LMKA+EE D EI  L+ QM
Subjt:  RSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLKNQM

Query:  QNRETAD
        + RETA+
Subjt:  QNRETAD

A0A5D3CD35 Ty3-gypsy retrotransposon protein1.0e-1343.64Show/hide
Query:  SLIRSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLK
        +L  S+G+  ++DQ  + +A  I+K +  S K  +V+K+NPL+D F     +SK+ ++ DVM VM+AD+ ++  MA+ME+KI+ LMKA+EE D EI  L+
Subjt:  SLIRSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAYLK

Query:  NQMQNRETAD
         QM+ RETA+
Subjt:  NQMQNRETAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTGTATTAGATATGAATGATATAATATATAGTTTAATTCGTTCTCGGGGGGTTGAGATAAAGGAGGACCAAACCCCTGATGCGATTGCAAACAAGATCGTCAA
GTTGATCGAAGGATCCTCCAAGGATAGAGTGGTCGTCAAAGATAACCCGTTGTTTGACCTGTTTACCCCTGTTGTCGGTCAATCAAAGGAGGCATCGAATCAAGATGTGA
TGTCTGTGATGATAGCCGATGTGGAATCCGACGAAAGGATGGCAGAGATGGAGAGAAAGATTAGTCTCCTGATGAAGGCGATCGAAGAAAATGATCTAGAGATTGCCTAC
TTGAAGAATCAAATGCAGAATCGCGAGACTGCTGATGGCCAGATTCGCCGACTCAATATCCCTACATTCTTGGGGACAAGACCGAGTTGGAAATCTCATTCTGGAAATAC
CATGGATTCCACCCATTTTGTAATTAGTACAAATGAGGTAATTCAACTCATTCATGTAGTTGACATGAGAGTGGGGGCATCTTATATGAAGAGTTCATACAAGACCGGAC
CACAAATTATTAGTCTAACCAGTGTAACACCAGTTTGGTCAGTTAATCTCATATCATTGGACCTAAGTAAGATTCCTATAACTTTAAAGTATTCAGTGGGAGGAAAAGTG
TATGAGATACATATTTTCTCACCTACGCTATCTCCGGGAAGTTCACATCGTGAGACTCATTCTTGGCCTCTCATTTTTCCTTCTAGGCAAGATTCACATACTGACAAAGA
ATTTTCTTCTAACTCGTTTAGATGTTCGTTCTTTATCAATCTCTCAATCCTATTGAGATTAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTTGTATTAGATATGAATGATATAATATATAGTTTAATTCGTTCTCGGGGGGTTGAGATAAAGGAGGACCAAACCCCTGATGCGATTGCAAACAAGATCGTCAA
GTTGATCGAAGGATCCTCCAAGGATAGAGTGGTCGTCAAAGATAACCCGTTGTTTGACCTGTTTACCCCTGTTGTCGGTCAATCAAAGGAGGCATCGAATCAAGATGTGA
TGTCTGTGATGATAGCCGATGTGGAATCCGACGAAAGGATGGCAGAGATGGAGAGAAAGATTAGTCTCCTGATGAAGGCGATCGAAGAAAATGATCTAGAGATTGCCTAC
TTGAAGAATCAAATGCAGAATCGCGAGACTGCTGATGGCCAGATTCGCCGACTCAATATCCCTACATTCTTGGGGACAAGACCGAGTTGGAAATCTCATTCTGGAAATAC
CATGGATTCCACCCATTTTGTAATTAGTACAAATGAGGTAATTCAACTCATTCATGTAGTTGACATGAGAGTGGGGGCATCTTATATGAAGAGTTCATACAAGACCGGAC
CACAAATTATTAGTCTAACCAGTGTAACACCAGTTTGGTCAGTTAATCTCATATCATTGGACCTAAGTAAGATTCCTATAACTTTAAAGTATTCAGTGGGAGGAAAAGTG
TATGAGATACATATTTTCTCACCTACGCTATCTCCGGGAAGTTCACATCGTGAGACTCATTCTTGGCCTCTCATTTTTCCTTCTAGGCAAGATTCACATACTGACAAAGA
ATTTTCTTCTAACTCGTTTAGATGTTCGTTCTTTATCAATCTCTCAATCCTATTGAGATTAATGTGA
Protein sequenceShow/hide protein sequence
MSFVLDMNDIIYSLIRSRGVEIKEDQTPDAIANKIVKLIEGSSKDRVVVKDNPLFDLFTPVVGQSKEASNQDVMSVMIADVESDERMAEMERKISLLMKAIEENDLEIAY
LKNQMQNRETADGQIRRLNIPTFLGTRPSWKSHSGNTMDSTHFVISTNEVIQLIHVVDMRVGASYMKSSYKTGPQIISLTSVTPVWSVNLISLDLSKIPITLKYSVGGKV
YEIHIFSPTLSPGSSHRETHSWPLIFPSRQDSHTDKEFSSNSFRCSFFINLSILLRLM