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Tan0016976 (gene) of Snake gourd v1 genome

Gene IDTan0016976
OrganismTrichosanthes anguina (Snake gourd v1)
Description60S ribosomal protein L18
Genome locationLG02:86458057..86461566
RNA-Seq ExpressionTan0016976
SyntenyTan0016976
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000039 - Ribosomal protein L18e
IPR021131 - Ribosomal protein L18e/L15P
IPR036227 - Ribosomal L18e/L15P superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586240.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia]6.9e-3288.24Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNKPPISLSRLIKFMKGKEDKI V+VGTVTDDIRVY+VP+LKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

KAG7030142.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-3289.41Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

KAG7030228.1 60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma]9.1e-3293.67Show/hide
Query:  VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

XP_022965965.1 60S ribosomal protein L18-3 [Cucurbita maxima]5.3e-3289.41Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

XP_022999399.1 60S ribosomal protein L18-2 [Cucurbita maxima]5.3e-3289.41Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

TrEMBL top hitse value%identityAlignment
A0A1R3IHC6 Ribosomal protein L18e5.7e-3287.06Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNKPP+SLSRLI+FMKGKEDKI V+VGTVTDDIRVYDVP+LKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

A0A2C9WMY0 Ribosomal_L18e/L15P domain-containing protein7.5e-3285.88Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK +NKPP+SLSRLI+FMKGKEDKI V+VGTVTDDIRVY+VPSLKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

A0A5D2TTS7 Ribosomal_L18e/L15P domain-containing protein7.5e-3281.11Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWSRKM
        +++SK VNKPP+SLSRLI+FMKGKEDKI V+VGTVTDDIRVY+VP+LKVTALRFTETARARI+KA GECLTFDQLALRAPLG+NT+S ++
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWSRKM

A0A6J1HQ85 60S ribosomal protein L18-32.6e-3289.41Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

A0A6J1KGZ8 60S ribosomal protein L18-22.6e-3289.41Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNKPPISLSRLIKFMKGKEDKI VIVGTVTDDIRVY+VP+LKVTALRFTETARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

SwissProt top hitse value%identityAlignment
O22254 Putative 60S ribosomal protein L18-15.0e-2568.97Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWS
        +++SK VNK P+SLSRL+++M GK+ KI VIVGTVTDD+R+ DVP+L VTALRFTE+ARARI KA GECLTFDQLAL  P    TWS
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWS

O65729 60S ribosomal protein L18 (Fragment)1.3e-2869.79Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWSRKMGSKYSR
        +++SK VN+PP+SLSRLIK+M+GKE KI V+VG VTDDIRVYDVP++KVTAL+FTETARARI+KA GECLTFDQLALR PL +    R  G K +R
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWSRKMGSKYSR

P42791 60S ribosomal protein L18-23.0e-3075.29Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNK P+SLSRL++FM GKEDKI V+VGT+TDD+RV+++P++KVTALRFTE ARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

Q4PM04 60S ribosomal protein L181.2e-2158.95Show/hide
Query:  VNKPPISLSRLIKFMK--GKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWSRKMGSKYSRSLC
        +NKP ISL+R+ +FMK  G+E+ I V+VGTVTDD+R+YDVP L++ ALR TE ARARI KA GE LTFDQLA++AP G+ T     G + SR  C
Subjt:  VNKPPISLSRLIKFMK--GKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWSRKMGSKYSRSLC

Q940B0 60S ribosomal protein L18-36.7e-3074.12Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNK P+SLSRL++FM GK+DKI V+VGT+TDD+RV+++P++KVTALRFTE ARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

Arabidopsis top hitse value%identityAlignment
AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein6.1e-2671.6Show/hide
Query:  VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWS
        VNK P+SLSRL+++M GK+ KI VIVGTVTDD+R+ DVP+L VTALRFTE+ARARI KA GECLTFDQLAL  P    TWS
Subjt:  VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWS

AT2G47570.2 Ribosomal protein L18e/L15 superfamily protein6.1e-2671.6Show/hide
Query:  VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWS
        VNK P+SLSRL+++M GK+ KI VIVGTVTDD+R+ DVP+L VTALRFTE+ARARI KA GECLTFDQLAL  P    TWS
Subjt:  VNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWS

AT3G05590.1 ribosomal protein L182.2e-3175.29Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNK P+SLSRL++FM GKEDKI V+VGT+TDD+RV+++P++KVTALRFTE ARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT

AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein4.8e-3174.12Show/hide
Query:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT
        +++SK VNK P+SLSRL++FM GK+DKI V+VGT+TDD+RV+++P++KVTALRFTE ARARIEKA GECLTFDQLALRAPLG+NT
Subjt:  MYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGTTTTAGGTCCCGTGATATGTACATTTCGAAAGCAGTGAACAAGCCACCAATTTCACTTTCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGACAAAATTGT
CGTCATTGTTGGAACCGTGACCGATGACATTCGTGTTTATGATGTCCCGTCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACTGCAAGGGCAAGGATTGAGAAGGCTA
GTGGTGAGTGTTTGACCTTCGACCAACTTGCCCTGAGAGCTCCTCTTGGCGAGAACACGTGGAGTAGGAAGATGGGTAGCAAGTATTCGAGATCGTTGTGTTTTAAAACG
GGTTGGCATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGTTTTAGGTCCCGTGATATGTACATTTCGAAAGCAGTGAACAAGCCACCAATTTCACTTTCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGACAAAATTGT
CGTCATTGTTGGAACCGTGACCGATGACATTCGTGTTTATGATGTCCCGTCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACTGCAAGGGCAAGGATTGAGAAGGCTA
GTGGTGAGTGTTTGACCTTCGACCAACTTGCCCTGAGAGCTCCTCTTGGCGAGAACACGTGGAGTAGGAAGATGGGTAGCAAGTATTCGAGATCGTTGTGTTTTAAAACG
GGTTGGCATGATTGA
Protein sequenceShow/hide protein sequence
MKSFRSRDMYISKAVNKPPISLSRLIKFMKGKEDKIVVIVGTVTDDIRVYDVPSLKVTALRFTETARARIEKASGECLTFDQLALRAPLGENTWSRKMGSKYSRSLCFKT
GWHD