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Tan0017041 (gene) of Snake gourd v1 genome

Gene IDTan0017041
OrganismTrichosanthes anguina (Snake gourd v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationLG04:46136722..46137397
RNA-Seq ExpressionTan0017041
SyntenyTan0017041
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041013.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]4.2e-4493.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

TYK20371.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]4.2e-4493.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]4.2e-4493.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

XP_022943007.1 uncharacterized protein LOC111447872 [Cucurbita moschata]2.5e-4492.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSKHKRWVVAEILRKARIY+PPSQ+ N+ VSDK KV A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

XP_022989005.1 uncharacterized protein LOC111486195 [Cucurbita maxima]1.1e-4493.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSKHKRWVVAEILRKARIYEPPSQ+ N+ VSDK KV A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic2.0e-4493.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic2.0e-4493.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic2.0e-4493.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

A0A6J1FRT9 30S ribosomal protein S17, chloroplastic1.2e-4492.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSKHKRWVVAEILRKARIY+PPSQ+ N+ VSDK KV A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic5.4e-4593.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPSRPLSKHKRWVVAEILRKARIYEPPSQ+ N+ VSDK KV A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
        PSTT
Subjt:  PSTT

SwissProt top hitse value%identityAlignment
A4XLS1 30S ribosomal protein S174.9e-1957.69Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKAR
        K  +G+VVS+KM K+VVVAV+ L  H LY + +KRT+KF AHDENN+C +GDKV +  +RPLSK KRW V +IL +A+
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKAR

A7HM43 30S ribosomal protein S171.5e-2056.63Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPP
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK KRWVV  IL ++++ E P
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPP

B1I1J7 30S ribosomal protein S171.1e-2166.67Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGDKVK+  +RPLS+HKRW VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARI

B9MKH2 30S ribosomal protein S174.9e-1958.97Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKAR
        K  VG+VVS+KM K+VVVAV+R   H LY + +KRT+KF AHDENN+C +GDKV +  +RPLSK KRW V +IL +A+
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKAR

Q8R7W3 30S ribosomal protein S172.9e-1959.46Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK KRW + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein2.1e-3368.27Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGD+VKLDPSRPLSK+K W+VAEI++KARIY P +      VS  +   +
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPA

Query:  PSTT
         STT
Subjt:  PSTT

AT1G79850.1 ribosomal protein S175.6e-1042.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein2.7e-3378.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGD+VKLDPSRPLSKHK W+V+EI++KARIY P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEP

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein1.6e-0438.03Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDKVKLDPSRPLSKHKRWVVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GD+V +   RPLSK  R+ V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDKVKLDPSRPLSKHKRWVVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTTGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCGGTGGTGGTTGCAGTGGACAGGTTGTTCTATCACAAGCTCTATAATCGTTACGTTAAACGCAC
TTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGCTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGGATTTATGAACCACCATCACAAGATCATAACCGGACTGTTTCAGACAAAAGCAAAGTGCCAGCTCCTTCAACCACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGGTTGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCGGTGGTGGTTGCAGTGGACAGGTTGTTCTATCACAAGCTCTATAATCGTTACGTTAAACGCAC
TTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGCTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGGATTTATGAACCACCATCACAAGATCATAACCGGACTGTTTCAGACAAAAGCAAAGTGCCAGCTCCTTCAACCACCTAA
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT