; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017127 (gene) of Snake gourd v1 genome

Gene IDTan0017127
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionglycine-rich RNA-binding protein GRP2A-like
Genome locationLG01:8846969..8847549
RNA-Seq ExpressionTan0017127
SyntenyTan0017127
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649249.1 hypothetical protein Csa_015081, partial [Cucumis sativus]1.4e-2150Show/hide
Query:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGC--RKKKESTRPTTSGSIS-SR--QAYYDVEFGQGIRTSRQD-TQRSEQSIRSD---RQLGAQT-----
        +L++KPSI+I IIC SL+ V  ILCCF IIGC  RKK  +  PT S SI  SR  Q Y D+EFGQGIRT RQD T RSE+SI SD    Q G Q+     
Subjt:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGC--RKKKESTRPTTSGSIS-SR--QAYYDVEFGQGIRTSRQD-TQRSEQSIRSD---RQLGAQT-----

Query:  ---RSEEHSIRTDRSRSSQRSEPSV-----------RSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHD
           ++ E SI  D +RSS+R+E S+           + DRQ  + S IKDGGMAILAGAG A+ATAA  LGLS S  GGE+      D C DG    G  
Subjt:  ---RSEEHSIRTDRSRSSQRSEPSV-----------RSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHD

Query:  DSWVNGDGGGGCGNGSQL
          +  G G    GNGSQL
Subjt:  DSWVNGDGGGGCGNGSQL

KAG6600486.1 hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia]2.5e-4265.82Show/hide
Query:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISS---------RQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEH
        M ++KPSIII IICASLLA VVILCC  II  RK+K+STRPT SGSISS         RQ+YYDVE GQGIR  RQDT RSEQS+ SDR  GAQ RSE++
Subjt:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISS---------RQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEH

Query:  SIRTDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNG
        S RTDRSRSSQ SEPSV  D+    RSG KDGGMAI AGAG AMA AAAALG  LSS GG+EYG  GD Y GD    DG+ DS  NG+  GG G G
Subjt:  SIRTDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNG

XP_022142785.1 ctenidin-3-like [Momordica charantia]1.8e-1645.18Show/hide
Query:  MKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTR--PTTSGSISS-----RQAY--YDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEHSIR
        MKP   I IIC+S++A VVILCC  II  RKKKE+ R  P +S +I S     RQ Y  +D+E GQG RT                              
Subjt:  MKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTR--PTTSGSISS-----RQAY--YDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEHSIR

Query:  TDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRAD--GHDDSWVNGDGGGGCGNGSQ
                        +RQG + SGIKDGGMAILAGAGTA+ATAA   G  LSS+G E  G YGDD CGDGG +D  G+D S  +GDGGG CG+G +
Subjt:  TDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRAD--GHDDSWVNGDGGGGCGNGSQ

XP_022942031.1 glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata]1.1e-4265.48Show/hide
Query:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISS----------RQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEE
        M ++KPSIII IICASLLA VVILCC  II  RK+K+STRPT SGSISS          RQ+YYDVE GQGIR  RQDT RSEQS+ SDR  GAQ RSE+
Subjt:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISS----------RQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEE

Query:  HSIRTDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNG
        +S RTDRSRS+Q SEPSV  D+    RSG KDGGMAI AGAG AMA AAAALG  LSS GG+EYG  GD Y GD  R DG+ DS  NG+  GG G G
Subjt:  HSIRTDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNG

XP_023543717.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]5.3e-4566.84Show/hide
Query:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISS---------RQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEH
        M ++KPSIII IICASLLA VVILCC  II  R++K+STRPT SGSISS         RQ+YYDVE GQGIR  RQDT RSEQS+ SDR  GAQ RSE +
Subjt:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISS---------RQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEH

Query:  SIRTDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNG
        S RTDRSRSSQ SEPSV  D+Q    SG KDGGMAILAGAG AMA AAAA+G  LSS GG+EYG  GD Y GDG R DG+ DSW NG+  GG G G
Subjt:  SIRTDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNG

TrEMBL top hitse value%identityAlignment
A0A0A0L0B2 Uncharacterized protein6.9e-2250Show/hide
Query:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGC--RKKKESTRPTTSGSIS-SR--QAYYDVEFGQGIRTSRQD-TQRSEQSIRSD---RQLGAQT-----
        +L++KPSI+I IIC SL+ V  ILCCF IIGC  RKK  +  PT S SI  SR  Q Y D+EFGQGIRT RQD T RSE+SI SD    Q G Q+     
Subjt:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGC--RKKKESTRPTTSGSIS-SR--QAYYDVEFGQGIRTSRQD-TQRSEQSIRSD---RQLGAQT-----

Query:  ---RSEEHSIRTDRSRSSQRSEPSV-----------RSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHD
           ++ E SI  D +RSS+R+E S+           + DRQ  + S IKDGGMAILAGAG A+ATAA  LGLS S  GGE+      D C DG    G  
Subjt:  ---RSEEHSIRTDRSRSSQRSEPSV-----------RSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHD

Query:  DSWVNGDGGGGCGNGSQL
          +  G G    GNGSQL
Subjt:  DSWVNGDGGGGCGNGSQL

A0A5A7VBP6 Uncharacterized protein5.8e-1349.74Show/hide
Query:  GCRKKKESTRPTTSGSIS-SR--QAYYDVEFGQGIRTSRQD-TQRSEQSIRSDRQLGAQT------------RSEEHSIRTDRSRSSQRSE---------
        G +KK     PT S SI  SR  Q Y DVEFGQGIRT RQD T RSEQSI  D + G+Q             ++ E SI  D +RSS+R+E         
Subjt:  GCRKKKESTRPTTSGSIS-SR--QAYYDVEFGQGIRTSRQD-TQRSEQSIRSDRQLGAQT------------RSEEHSIRTDRSRSSQRSE---------

Query:  ---PSVRSDRQ-GVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGG--GCGNGSQL
            S R DRQ   + S IKDGGMAILAGAG A+ATAA  LGLS S  GGE+      D CG     DG D S V G GGG   CGNGSQL
Subjt:  ---PSVRSDRQ-GVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGG--GCGNGSQL

A0A6J1CLX2 ctenidin-3-like8.7e-1745.18Show/hide
Query:  MKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTR--PTTSGSISS-----RQAY--YDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEHSIR
        MKP   I IIC+S++A VVILCC  II  RKKKE+ R  P +S +I S     RQ Y  +D+E GQG RT                              
Subjt:  MKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTR--PTTSGSISS-----RQAY--YDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEHSIR

Query:  TDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRAD--GHDDSWVNGDGGGGCGNGSQ
                        +RQG + SGIKDGGMAILAGAGTA+ATAA   G  LSS+G E  G YGDD CGDGG +D  G+D S  +GDGGG CG+G +
Subjt:  TDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRAD--GHDDSWVNGDGGGGCGNGSQ

A0A6J1FMR9 glycine-rich RNA-binding protein GRP2A-like5.4e-4365.48Show/hide
Query:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISS----------RQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEE
        M ++KPSIII IICASLLA VVILCC  II  RK+K+STRPT SGSISS          RQ+YYDVE GQGIR  RQDT RSEQS+ SDR  GAQ RSE+
Subjt:  MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISS----------RQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEE

Query:  HSIRTDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNG
        +S RTDRSRS+Q SEPSV  D+    RSG KDGGMAI AGAG AMA AAAALG  LSS GG+EYG  GD Y GD  R DG+ DS  NG+  GG G G
Subjt:  HSIRTDRSRSSQRSEPSVRSDRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGAGATGAAACCTTCCATCATCATTTTCATAATTTGCGCTTCTTTACTAGCTGTTGTTGTGATTTTATGTTGTTTTTATATTATTGGATGTCGTAAGAAGAAAGA
ATCAACACGACCTACTACAAGTGGATCCATTAGTTCAAGACAAGCATACTATGATGTCGAGTTCGGACAAGGGATTCGAACATCCAGACAAGACACTCAAAGAAGCGAAC
AAAGCATTCGATCAGACAGACAATTAGGTGCCCAAACTAGAAGCGAAGAACACAGCATTCGAACAGACCGATCACGAAGCAGTCAACGAAGTGAACCGAGTGTTCGAAGC
GACAGACAAGGCGTTCAAAGAAGCGGAATCAAGGACGGTGGAATGGCCATCTTGGCTGGAGCAGGTACTGCTATGGCTACTGCAGCTGCAGCCCTTGGATTAAGTTTAAG
TAGTGATGGAGGAGAAGAATATGGTCGCTATGGTGATGATTATTGTGGAGACGGTGGCCGTGCCGATGGACATGACGATAGTTGGGTCAATGGCGACGGTGGTGGTGGTT
GTGGCAATGGCTCTCAACTCTGA
mRNA sequenceShow/hide mRNA sequence
CCCTAATAATGTTAGAGATGAAACCTTCCATCATCATTTTCATAATTTGCGCTTCTTTACTAGCTGTTGTTGTGATTTTATGTTGTTTTTATATTATTGGATGTCGTAAG
AAGAAAGAATCAACACGACCTACTACAAGTGGATCCATTAGTTCAAGACAAGCATACTATGATGTCGAGTTCGGACAAGGGATTCGAACATCCAGACAAGACACTCAAAG
AAGCGAACAAAGCATTCGATCAGACAGACAATTAGGTGCCCAAACTAGAAGCGAAGAACACAGCATTCGAACAGACCGATCACGAAGCAGTCAACGAAGTGAACCGAGTG
TTCGAAGCGACAGACAAGGCGTTCAAAGAAGCGGAATCAAGGACGGTGGAATGGCCATCTTGGCTGGAGCAGGTACTGCTATGGCTACTGCAGCTGCAGCCCTTGGATTA
AGTTTAAGTAGTGATGGAGGAGAAGAATATGGTCGCTATGGTGATGATTATTGTGGAGACGGTGGCCGTGCCGATGGACATGACGATAGTTGGGTCAATGGCGACGGTGG
TGGTGGTTGTGGCAATGGCTCTCAACTCTGA
Protein sequenceShow/hide protein sequence
MLEMKPSIIIFIICASLLAVVVILCCFYIIGCRKKKESTRPTTSGSISSRQAYYDVEFGQGIRTSRQDTQRSEQSIRSDRQLGAQTRSEEHSIRTDRSRSSQRSEPSVRS
DRQGVQRSGIKDGGMAILAGAGTAMATAAAALGLSLSSDGGEEYGRYGDDYCGDGGRADGHDDSWVNGDGGGGCGNGSQL