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Tan0017131 (gene) of Snake gourd v1 genome

Gene IDTan0017131
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG08:54566663..54567052
RNA-Seq ExpressionTan0017131
SyntenyTan0017131
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-4072.52Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE+RM E EKK+NML+KAVEERD+EIA LKN IESRDAAESS T  ++  NKGK  +QE   Q+STSIASLSVQQLQ+MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSK YTKRIDNLRMPNGYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-4174.81Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVRN--KGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE RMVE EKK+NML+K VEERDYEIASLKN IESRDAAESS    V+N  KGK  +QE   Q+STSIASLSVQQLQ+MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVRN--KGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSKSYTKRIDNLRMPNGYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]6.0e-4070.99Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE+RM E EKK+NML+KAVEERD+EIA LKN IESRDAAESS T  ++  NKGK  +QE   Q+STSIASLSVQQLQ+MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSK YTKRIDN+RMP+GYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-3970.23Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE+RM E EKK+NML+KAVEE+D+EIA LKN IESRDAAESS T  ++  NKGK  +QE   Q+STSIASLSVQQLQ+MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSK YTKRIDN+RMP+GYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-4071.76Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE+RM E EKK+NML+KAVEERD+EIASLKN IESRDA ESS T  ++  NKGK  +QE   Q+STSIASLSVQQL +MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSK YTKRIDNLRMPNGYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein7.6e-4172.52Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE+RM E EKK+NML+KAVEERD+EIA LKN IESRDAAESS T  ++  NKGK  +QE   Q+STSIASLSVQQLQ+MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSK YTKRIDNLRMPNGYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

A0A5A7TZU9 Ribonuclease H2.9e-4070.99Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE+RM E EKK+NML+KAVEERD+EIA LKN IESRDAAESS T  ++  NKGK  +QE   Q+STSIASLSVQQLQ+MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSK YTKRIDN+RMP+GYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

A0A5A7U5H1 Ty3-gypsy retrotransposon protein6.5e-4070.23Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE+RM E EKK+NML+KAVEE+D+EIA LKN IESRDAAESS T  ++  NKGK  +QE   Q+STSIASLSVQQLQ+MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSK YTKRIDN+RMP+GYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.7e-4071.76Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE+RM E EKK+NML+KAVEERD+EIASLKN IESRDA ESS T  ++  NKGK  +QE   Q+STSIASLSVQQL +MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVR--NKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSK YTKRIDNLRMPNGYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

A0A5D3C4W1 Ty3-gypsy retrotransposon protein5.3e-4274.81Show/hide
Query:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVRN--KGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG
        MSVM+TD   SE RMVE EKK+NML+K VEERDYEIASLKN IESRDAAESS    V+N  KGK  +QE   Q+STSIASLSVQQLQ+MI NSI+ QYGG
Subjt:  MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVRN--KGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGG

Query:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ
        P Q   +YSKSYTKRIDNLRMPNGYQPPKFQ
Subjt:  PTQNSLMYSKSYTKRIDNLRMPNGYQPPKFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTTATGATGACTGATGCAGGCATTAGTGAAGAAAGAATGGTTGAATTTGAAAAAAAGATCAACATGTTATTGAAGGCAGTTGAAGAAAGAGATTATGAAATCGC
TTCTCTCAAGAATCAGATTGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCCTGCTGTCAGAAATAAGGGAAAGACCTCTGTACAAGAAGATCATACACAACATTCCA
CTTCAATTGCTTCATTGTCTGTCCAACAACTCCAGGATATGATTACAAACTCCATCAGAGCACAATATGGTGGGCCTACTCAAAACTCTCTTATGTATTCCAAGTCATAT
ACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATACCAGCCGCCAAAGTTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTTATGATGACTGATGCAGGCATTAGTGAAGAAAGAATGGTTGAATTTGAAAAAAAGATCAACATGTTATTGAAGGCAGTTGAAGAAAGAGATTATGAAATCGC
TTCTCTCAAGAATCAGATTGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCCTGCTGTCAGAAATAAGGGAAAGACCTCTGTACAAGAAGATCATACACAACATTCCA
CTTCAATTGCTTCATTGTCTGTCCAACAACTCCAGGATATGATTACAAACTCCATCAGAGCACAATATGGTGGGCCTACTCAAAACTCTCTTATGTATTCCAAGTCATAT
ACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATACCAGCCGCCAAAGTTTCAATAA
Protein sequenceShow/hide protein sequence
MSVMMTDAGISEERMVEFEKKINMLLKAVEERDYEIASLKNQIESRDAAESSQTPAVRNKGKTSVQEDHTQHSTSIASLSVQQLQDMITNSIRAQYGGPTQNSLMYSKSY
TKRIDNLRMPNGYQPPKFQ