; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017137 (gene) of Snake gourd v1 genome

Gene IDTan0017137
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionhistone deacetylase 6
Genome locationLG01:6184300..6186708
RNA-Seq ExpressionTan0017137
SyntenyTan0017137
Gene Ontology termsGO:0009958 - positive gravitropism (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]3.6e-7089.58Show/hide
Query:  MAKEAGSSSSNLMPCILEEEV-EELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLA
        MA EAGSSSSN  PC++EEEV EE L GAESGWVEALTSCDHLPSL SDLAHIP PDTAC EC+NPKENWLCLCCKNVFCSRFVNKHML+HYQQSNH LA
Subjt:  MAKEAGSSSSNLMPCILEEEV-EELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        LSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

KAG7030950.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]8.3e-6779.63Show/hide
Query:  MAKEAGSSSSNLMPCILEEEV-EELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSE------------------CQNPKENWLCLCCKNVFCSR
        MA EAGSSSSN  PC++EEEV EE L GAESGWVEALTSCDHLPSL SDLAHIP PDTAC E                  C+NPKENWLCLCCKNVFCSR
Subjt:  MAKEAGSSSSNLMPCILEEEV-EELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSE------------------CQNPKENWLCLCCKNVFCSR

Query:  FVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        FVNKHML+HYQQSNH LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Subjt:  FVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

XP_008454385.1 PREDICTED: histone deacetylase 6 [Cucumis melo]1.3e-6483.78Show/hide
Query:  MAKEAGSSS--SNLMPCILE---EEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSN
        MA+EAGSSS  SN +P I+E   E  EELL GA SGWV+ALTSCDHL SLSSDLAHIP P T CS+CQNPKENWLCLCCK+VFCSRFVNKHML+HY+QS 
Subjt:  MAKEAGSSS--SNLMPCILE---EEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSN

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

XP_022149228.1 histone deacetylase 6 [Momordica charantia]7.3e-7190.21Show/hide
Query:  MAKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLAL
        MA EAGSSSSNL PCI+EEE EE L GAE+GWVEALT CDHL SLSSDLAHIPTPDTACSECQNPKENWLCLCCKN+ CSRFVNKHML+HYQQS HCLAL
Subjt:  MAKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLAL

Query:  SYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        SYSDLSVWCFSCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  SYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

XP_038904979.1 histone deacetylase 6 [Benincasa hispida]8.3e-6788.19Show/hide
Query:  MAKEAGSSSSNLMPCILEEEV-EELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLA
        MAKEAGSSSSN +P ILEEEV EELL GAESGWVEALTSCDHL  LS DLAHIP PD  CSECQNPKENWLCL CK+VFCSRFVNKHML+HY+Q  HCLA
Subjt:  MAKEAGSSSSNLMPCILEEEV-EELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

TrEMBL top hitse value%identityAlignment
A0A0A0KT14 UBP-type domain-containing protein1.9e-6483.56Show/hide
Query:  MAKEAGSSS--SNLMPCILEEEV-EELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHC
        MA++AGSSS  SN +  I+E+EV EELL GA SGWV+ALTSCDHL SLSSDLAHIP P T CS+CQNPKENW+CLCCK+VFCSRFVNKHML+HY+QS HC
Subjt:  MAKEAGSSS--SNLMPCILEEEV-EELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

A0A1S3BZ94 histone deacetylase 66.4e-6583.78Show/hide
Query:  MAKEAGSSS--SNLMPCILE---EEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSN
        MA+EAGSSS  SN +P I+E   E  EELL GA SGWV+ALTSCDHL SLSSDLAHIP P T CS+CQNPKENWLCLCCK+VFCSRFVNKHML+HY+QS 
Subjt:  MAKEAGSSS--SNLMPCILE---EEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSN

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

A0A5A7TNA2 Histone deacetylase 61.9e-6483.11Show/hide
Query:  MAKEAGSSS--SNLMPCILE---EEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSN
        MA+EAGSSS  SN +P I+E   E  EELL GA SGWV+ALTSCDHL SLSSDLAHIP P T CS+CQNPKENWLCLCCK+VFCSRFVNKHML+HY+QS 
Subjt:  MAKEAGSSS--SNLMPCILE---EEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSN

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGE PPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

A0A6J1D695 histone deacetylase 63.5e-7190.21Show/hide
Query:  MAKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLAL
        MA EAGSSSSNL PCI+EEE EE L GAE+GWVEALT CDHL SLSSDLAHIPTPDTACSECQNPKENWLCLCCKN+ CSRFVNKHML+HYQQS HCLAL
Subjt:  MAKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLAL

Query:  SYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        SYSDLSVWCFSCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  SYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

A0A6J1FUZ8 BTB/POZ domain-containing protein NPY2-like isoform X21.0e-6280.99Show/hide
Query:  AKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALS
        A  +  SS+  +P  +++  +E L GAESGWVEALTSCDHLPSL SDLAHIP PDTAC EC+NPKENWLCLCCKNVFCSRFVNKHML+HYQQSNH LALS
Subjt:  AKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALS

Query:  YSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR
        YSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGE PPFR
Subjt:  YSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

SwissProt top hitse value%identityAlignment
Q20296 Histone deacetylase 61.1e-1637.14Show/hide
Query:  AKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALS
        +  +GSSSS+  P        E++    +  V  L +C HL  +           TACSECQ   E W CL C    C RFVN+H + H+  S+H +ALS
Subjt:  AKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALS

Query:  YSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
         +DLSVWC+ CD+Y+       L      A+  KFGE  P
Subjt:  YSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP

Q54QE6 NAD-dependent deacetylase sir2A1.0e-1145Show/hide
Query:  TACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYL
        T C  C +  ENW+C+ C  V CSR VN H  EH++ + H ++ S+SD S WC++CD Y+
Subjt:  TACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYL

Q9H0E7 Ubiquitin carboxyl-terminal hydrolase 442.6e-1032.14Show/hide
Query:  ALTSCDHLP--SLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYL
        A+ +C H+    L+ D + +      C +C   +  W CL C +V C R++ +H L+H+Q+S+H +AL  +++ V+C+ CD Y+
Subjt:  ALTSCDHLP--SLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYL

Q9UBN7 Histone deacetylase 64.8e-1740.37Show/hide
Query:  VEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY
        V  L  C HL ++    A        C +C   +ENW+CL C  V+C R++N HML+H+  S H L LSY DLS WC+ C AY+  Q + +   V  +A+
Subjt:  VEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY

Query:  ILKFGEAPP
          KFGE  P
Subjt:  ILKFGEAPP

Q9Z2V5 Histone deacetylase 65.3e-1640.37Show/hide
Query:  VEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY
        V  L+ C HL ++    A        C  C   +ENW+CL C  V+CSR+VN HM+ H++ S H L LS  DLS WC+ C AY+     ++L+ V   A+
Subjt:  VEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY

Query:  ILKFGEAPP
          KFGE  P
Subjt:  ILKFGEAPP

Arabidopsis top hitse value%identityAlignment
AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein4.1e-1153.45Show/hide
Query:  KEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACS
        K   SSSS+  P  + +E ++ + GA SGWVEA  +CDHL +LS DL H+PTPDT CS
Subjt:  KEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACS

AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein7.1e-5668.35Show/hide
Query:  KEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSY
        K   SSSS+  P  + +E ++ + GA SGWVEA  +CDHL +LS DL H+PTPDT CS CQNP ENWLCLCCK V CSRFVN+HML H+QQ+ HCLALSY
Subjt:  KEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSY

Query:  SDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP
        SDLSVWCF C+AYLDAQ+I +LRP+H+ AYILKFGEAPP
Subjt:  SDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP

AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein3.9e-0629.51Show/hide
Query:  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYL
        ++ C  CQ  +  W+C+ C  V C R+   H   H++++ HC +L      VW ++ D Y+
Subjt:  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYL

AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein3.9e-0629.51Show/hide
Query:  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYL
        ++ C  CQ  +  W+C+ C  V C R+   H   H++++ HC +L      VW ++ D Y+
Subjt:  DTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCFSCDAYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAGAAGCCGGCTCCTCCTCTTCCAACCTAATGCCATGCATACTCGAAGAAGAAGTTGAAGAACTCTTATGCGGCGCCGAATCGGGATGGGTCGAAGCCCTGAC
TTCTTGTGATCATCTCCCTTCGCTATCCTCCGACCTCGCTCACATTCCAACCCCTGATACGGCCTGCAGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCT
GTAAGAATGTCTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTGAACATTATCAGCAATCAAATCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTC
TCCTGCGATGCGTATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTGAAATTTGGCGAGGCCCCACCATTTCGATAG
mRNA sequenceShow/hide mRNA sequence
CAAGTCCTGAAAATTCTCTCTTCATGAATGGCGAAAGAAGCCGGCTCCTCCTCTTCCAACCTAATGCCATGCATACTCGAAGAAGAAGTTGAAGAACTCTTATGCGGCGC
CGAATCGGGATGGGTCGAAGCCCTGACTTCTTGTGATCATCTCCCTTCGCTATCCTCCGACCTCGCTCACATTCCAACCCCTGATACGGCCTGCAGCGAATGTCAGAATC
CCAAGGAGAACTGGTTGTGCTTATGCTGTAAGAATGTCTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTGAACATTATCAGCAATCAAATCATTGCCTTGCACTCAGC
TACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGATGCGTATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTGAAATTTGGCGA
GGCCCCACCATTTCGATAGTAGGATTAATCATCCTGCAGGGAGAACTGAAATTTAAGACTAGTGTTGTAATTTTTAAGTCTCGATATCTTAGATGTTTTGGTTGGTTTCT
TGGTTTGAAGAAGTGATCATTTCAAACAAACGGCATATGATCTTGACATGTATTGGGTTGGTTTTGTCAGATGTTCATTATAAGTTGTTGATTGTTTCTGTTACAGAAAT
AGGAGGGATAAATTGGAATCTCCTATCTTGTTCAAGAAAATTTTAGGGAGTTTTTACTAGAAACTGATAAATCTTCCTTCAAACCTTGATGATAACATCAATAAAATTGA
TTCTCCATTTTTCCTTGAAGAAAA
Protein sequenceShow/hide protein sequence
MAKEAGSSSSNLMPCILEEEVEELLCGAESGWVEALTSCDHLPSLSSDLAHIPTPDTACSECQNPKENWLCLCCKNVFCSRFVNKHMLEHYQQSNHCLALSYSDLSVWCF
SCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR